Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131085476..131087927-chr6:131091434..131093029,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10485095	0.97[ASN][1000 genomes]
rs17059420	1.00[EUR][1000 genomes]
rs17059453	1.00[EUR][1000 genomes]
rs17059482	0.94[ASN][1000 genomes]
rs17059490	0.94[ASN][1000 genomes]
rs17059520	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17059525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55925405	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56275069	0.94[ASN][1000 genomes]
rs56684748	1.00[EUR][1000 genomes]
rs56725541	1.00[EUR][1000 genomes]
rs56771583	1.00[EUR][1000 genomes]
rs72992244	1.00[EUR][1000 genomes]
rs72992266	1.00[EUR][1000 genomes]
rs72992272	1.00[EUR][1000 genomes]
rs72992280	1.00[EUR][1000 genomes]
rs72992285	1.00[EUR][1000 genomes]
rs72992289	1.00[EUR][1000 genomes]
rs72992294	1.00[EUR][1000 genomes]
rs72992295	1.00[EUR][1000 genomes]
rs72992299	1.00[EUR][1000 genomes]
rs72994307	1.00[EUR][1000 genomes]
rs72994310	1.00[EUR][1000 genomes]
rs72994322	1.00[EUR][1000 genomes]
rs72994328	1.00[EUR][1000 genomes]
rs72996238	0.97[ASN][1000 genomes]
rs72996241	1.00[ASN][1000 genomes]
rs72996247	0.98[ASN][1000 genomes]
rs72996254	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72996267	0.97[ASN][1000 genomes]
rs72996271	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72996290	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72996293	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830806	chr6:130938330-131107137	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604664	chr6:131004998-131115817	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1025019	chr6:131074711-131116070	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv604665	chr6:131077027-131115817	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv604666	chr6:131078180-131122295	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131091000-131099400	Weak transcription	Fetal Brain Male	brain

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