Variant report

Variant	rs56788602
Chromosome Location	chr10:22311467-22311468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22292808..22294796-chr10:22310013..22312120,2	K562	blood:
2	chr10:22309684..22311536-chr10:22724578..22726219,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11012852	1.00[AMR][1000 genomes]
rs58394719	1.00[AMR][1000 genomes]
rs59966419	1.00[AMR][1000 genomes]
rs61184296	1.00[AMR][1000 genomes]
rs61322581	1.00[AMR][1000 genomes]
rs6482196	1.00[AMR][1000 genomes]
rs7067664	1.00[AMR][1000 genomes]
rs7076741	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831808	chr10:22187850-22357814	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22307800-22311600	Weak transcription	Fetal Kidney	kidney
2	chr10:22310400-22311800	Enhancers	Fetal Lung	lung
3	chr10:22310600-22312400	Enhancers	Fetal Heart	heart
4	chr10:22310800-22311600	Enhancers	Duodenum Smooth Muscle	Duodenum
5	chr10:22310800-22311800	Enhancers	Colon Smooth Muscle	Colon
6	chr10:22310800-22311800	Enhancers	Placenta	Placenta
7	chr10:22310800-22311800	Enhancers	Lung	lung
8	chr10:22310800-22312200	Enhancers	Right Ventricle	heart
9	chr10:22310800-22312400	Enhancers	Fetal Stomach	stomach
10	chr10:22310800-22312400	Enhancers	Left Ventricle	heart
11	chr10:22311000-22311600	Enhancers	Primary T cells fromperipheralblood	blood
12	chr10:22311000-22311600	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr10:22311000-22311800	Enhancers	Right Atrium	heart
14	chr10:22311000-22312400	Enhancers	Spleen	Spleen
15	chr10:22311200-22311600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:22311200-22311800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
17	chr10:22311200-22311800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:22311200-22311800	Enhancers	Fetal Thymus	thymus
19	chr10:22311200-22311800	Flanking Active TSS	Stomach Smooth Muscle	stomach
20	chr10:22311200-22312000	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr10:22311200-22312000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
22	chr10:22311200-22312200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
23	chr10:22311200-22312200	Flanking Active TSS	K562	blood
24	chr10:22311200-22312400	Enhancers	Primary B cells from peripheral blood	blood
25	chr10:22311400-22311600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr10:22311400-22311600	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
27	chr10:22311400-22311600	Active TSS	GM12878-XiMat	blood
28	chr10:22311400-22311600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
29	chr10:22311400-22311800	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr10:22311400-22311800	Active TSS	Primary B cells from cord blood	blood
31	chr10:22311400-22311800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
32	chr10:22311400-22311800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr10:22311400-22311800	Active TSS	Fetal Brain Male	brain
34	chr10:22311400-22312000	Flanking Active TSS	Primary T cells from cord blood	blood
35	chr10:22311400-22312000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
36	chr10:22311400-22312000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
37	chr10:22311400-22312000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr10:22311400-22312000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
39	chr10:22311400-22312000	Flanking Active TSS	Adipose Nuclei	Adipose
40	chr10:22311400-22312200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
41	chr10:22311400-22316200	Weak transcription	Stomach Mucosa	stomach

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