Variant report

Variant	rs56798105
Chromosome Location	chr8:126114846-126114847
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:126112294..126114961-chr8:126440449..126443868,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16900320	1.00[EUR][1000 genomes]
rs28392978	1.00[EUR][1000 genomes]
rs56988673	1.00[EUR][1000 genomes]
rs57107402	1.00[EUR][1000 genomes]
rs57687393	1.00[EUR][1000 genomes]
rs57708414	1.00[EUR][1000 genomes]
rs57876250	1.00[EUR][1000 genomes]
rs58217279	1.00[EUR][1000 genomes]
rs59134934	1.00[EUR][1000 genomes]
rs59472229	1.00[EUR][1000 genomes]
rs59652837	1.00[EUR][1000 genomes]
rs59667546	1.00[EUR][1000 genomes]
rs60361771	1.00[EUR][1000 genomes]
rs60524861	1.00[EUR][1000 genomes]
rs6992378	1.00[EUR][1000 genomes]
rs6992389	1.00[EUR][1000 genomes]
rs7001448	1.00[EUR][1000 genomes]
rs73337613	1.00[EUR][1000 genomes]
rs73704923	1.00[EUR][1000 genomes]
rs7814242	1.00[EUR][1000 genomes]
rs7820192	1.00[EUR][1000 genomes]
rs7822467	1.00[EUR][1000 genomes]
rs7825375	1.00[EUR][1000 genomes]
rs7834583	1.00[EUR][1000 genomes]
rs7839038	1.00[EUR][1000 genomes]
rs7839468	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1030748	chr8:126012282-126137840	ZNF genes & repeats Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv539743	chr8:126012282-126137840	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv949614	chr8:126063646-126376699	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv465803	chr8:126068197-126132816	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
6	nsv612148	chr8:126068197-126132816	Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
7	nsv917158	chr8:126101990-126255266	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126104600-126116200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:126104600-126116600	Weak transcription	Esophagus	oesophagus
3	chr8:126104600-126116600	Weak transcription	Gastric	stomach
4	chr8:126104600-126120200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:126104800-126116400	Weak transcription	Aorta	Aorta
6	chr8:126105000-126116600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr8:126105000-126116800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr8:126105000-126123200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr8:126105000-126123200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr8:126105000-126131400	Weak transcription	Fetal Kidney	kidney
11	chr8:126105200-126156400	Weak transcription	Fetal Brain Male	brain
12	chr8:126105400-126115800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr8:126105400-126115800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr8:126105400-126116400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr8:126105400-126116400	Weak transcription	Colonic Mucosa	Colon
16	chr8:126105400-126116400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr8:126105400-126116600	Weak transcription	Brain Germinal Matrix	brain
18	chr8:126105400-126116600	Weak transcription	Osteobl	bone
19	chr8:126105400-126116800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr8:126105400-126122200	Weak transcription	NHDF-Ad	bronchial
21	chr8:126105400-126123200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr8:126105400-126131200	Weak transcription	Fetal Heart	heart
23	chr8:126105600-126116000	Weak transcription	Brain Substantia Nigra	brain
24	chr8:126105600-126116400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr8:126105600-126116400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr8:126105600-126116400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr8:126105600-126116600	Weak transcription	Colon Smooth Muscle	Colon
28	chr8:126105600-126116800	Weak transcription	Small Intestine	intestine
29	chr8:126105600-126122600	Weak transcription	Stomach Mucosa	stomach
30	chr8:126106200-126116400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr8:126106200-126116400	Weak transcription	Pancreas	Pancrea
32	chr8:126106600-126118000	Strong transcription	Primary T cells from cord blood	blood
33	chr8:126107400-126116400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr8:126107600-126116400	Weak transcription	Fetal Lung	lung
35	chr8:126107800-126116200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr8:126107800-126116600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr8:126107800-126116600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr8:126108000-126116000	Weak transcription	Fetal Intestine Small	intestine
39	chr8:126108400-126116400	Weak transcription	Ovary	ovary
40	chr8:126108600-126122200	Weak transcription	NHEK	skin
41	chr8:126109000-126116000	Weak transcription	HMEC	breast
42	chr8:126109200-126116400	Weak transcription	NHLF	lung
43	chr8:126110000-126116400	Weak transcription	Primary hematopoietic stem cells	blood
44	chr8:126110000-126116600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr8:126112000-126116600	Weak transcription	Psoas Muscle	Psoas
46	chr8:126112800-126116200	Weak transcription	HUVEC	blood vessel
47	chr8:126113200-126118800	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr8:126113400-126118000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr8:126113400-126118600	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr8:126113400-126121600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links