Variant report

Variant	rs56807556
Chromosome Location	chr1:175804771-175804772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs55769949	1.00[AMR][1000 genomes]
rs61169187	0.92[AFR][1000 genomes]
rs6671176	1.00[AMR][1000 genomes]
rs6672402	1.00[AMR][1000 genomes]
rs72709218	0.92[AFR][1000 genomes]
rs72709228	0.92[AFR][1000 genomes]
rs72709230	0.92[AFR][1000 genomes]
rs72709233	0.92[AFR][1000 genomes]
rs72709234	0.92[AFR][1000 genomes]
rs72709246	0.92[AFR][1000 genomes]
rs72709257	0.92[AFR][1000 genomes]
rs72709260	0.92[AFR][1000 genomes]
rs72709261	0.92[AFR][1000 genomes]
rs72709266	0.92[AFR][1000 genomes]
rs72709269	0.92[AFR][1000 genomes]
rs72709271	0.92[AFR][1000 genomes]
rs72709274	0.92[AFR][1000 genomes]
rs72709275	0.92[AFR][1000 genomes]
rs72709276	0.92[AFR][1000 genomes]
rs72709278	0.92[AFR][1000 genomes]
rs72709279	0.92[AFR][1000 genomes]
rs72709282	0.92[AFR][1000 genomes]
rs74127109	1.00[AMR][1000 genomes]
rs74127114	1.00[AMR][1000 genomes]
rs74129320	1.00[AMR][1000 genomes]
rs7542456	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33328	chr1:175446583-175910001	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv872560	chr1:175648631-175869554	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175799800-175804800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr1:175802200-175804800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr1:175802200-175806200	Enhancers	Fetal Intestine Large	intestine
4	chr1:175802800-175806000	Enhancers	Fetal Intestine Small	intestine
5	chr1:175803200-175805000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr1:175803600-175805000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:175803800-175805000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr1:175804200-175808800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:175804200-175809000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:175804200-175810600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr1:175804400-175805400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr1:175804400-175808800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr1:175804600-175809000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr1:175804600-175809000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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