Variant report

Variant	rs55769949
Chromosome Location	chr1:175845184-175845185
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:175843437..175845524-chr1:175846686..175849178,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56807556	1.00[AMR][1000 genomes]
rs6671176	1.00[AMR][1000 genomes]
rs6672402	1.00[AMR][1000 genomes]
rs74127109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74127114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74129320	1.00[AMR][1000 genomes]
rs7542456	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33328	chr1:175446583-175910001	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv872560	chr1:175648631-175869554	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv522255	chr1:175827683-175849898	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175835600-175848200	Weak transcription	Aorta	Aorta
2	chr1:175836000-175845400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:175838600-175845600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:175838800-175847400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr1:175839800-175845600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:175839800-175845600	Weak transcription	Adipose Nuclei	Adipose
7	chr1:175841600-175846200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr1:175841600-175846800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:175842000-175846400	Weak transcription	Brain Angular Gyrus	brain
10	chr1:175842000-175846800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr1:175842200-175845400	Weak transcription	Fetal Muscle Leg	muscle
12	chr1:175842400-175848600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:175842800-175845200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr1:175843000-175846400	Weak transcription	Brain Hippocampus Middle	brain
15	chr1:175843000-175855000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr1:175843200-175846800	Weak transcription	Brain Substantia Nigra	brain
17	chr1:175843400-175846200	Weak transcription	Brain Germinal Matrix	brain
18	chr1:175843400-175846800	Weak transcription	Brain Anterior Caudate	brain
19	chr1:175844800-175845400	Enhancers	Fetal Stomach	stomach
20	chr1:175844800-175847600	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links