Variant report
| Variant | rs56809906 |
|---|---|
| Chromosome Location | chr12:51310601-51310602 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000185432 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs11169614 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11835513 | 1.00[AMR][1000 genomes] |
| rs12300872 | 0.87[AFR][1000 genomes] |
| rs17124979 | 1.00[AMR][1000 genomes] |
| rs17125085 | 1.00[AMR][1000 genomes] |
| rs17125212 | 1.00[AMR][1000 genomes] |
| rs17125227 | 1.00[AMR][1000 genomes] |
| rs17125245 | 1.00[AMR][1000 genomes] |
| rs56840343 | 1.00[AMR][1000 genomes] |
| rs56883422 | 1.00[AMR][1000 genomes] |
| rs56979742 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58343549 | 1.00[AMR][1000 genomes] |
| rs58493263 | 1.00[AMR][1000 genomes] |
| rs60089061 | 1.00[AMR][1000 genomes] |
| rs60610335 | 1.00[AMR][1000 genomes] |
| rs60720958 | 1.00[AMR][1000 genomes] |
| rs61550892 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7137990 | 1.00[AMR][1000 genomes] |
| rs7303962 | 1.00[AMR][1000 genomes] |
| rs7309789 | 1.00[AMR][1000 genomes] |
| rs7312269 | 1.00[AMR][1000 genomes] |
| rs73296205 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73297927 | 1.00[AMR][1000 genomes] |
| rs73297940 | 1.00[AMR][1000 genomes] |
| rs73297966 | 1.00[AMR][1000 genomes] |
| rs73298000 | 1.00[AMR][1000 genomes] |
| rs73300041 | 1.00[AMR][1000 genomes] |
| rs73308073 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73308091 | 1.00[AMR][1000 genomes] |
| rs73308094 | 1.00[AMR][1000 genomes] |
| rs73308096 | 1.00[AMR][1000 genomes] |
| rs73310009 | 1.00[AMR][1000 genomes] |
| rs73310019 | 1.00[AMR][1000 genomes] |
| rs73310024 | 1.00[AMR][1000 genomes] |
| rs73311230 | 1.00[AMR][1000 genomes] |
| rs73311252 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3414501 | chr12:51174503-51534707 | Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:51309800-51311000 | ZNF genes & repeats | Duodenum Smooth Muscle | Duodenum |
| 2 | chr12:51310200-51311200 | ZNF genes & repeats | iPS-15b Cell Line | embryonic stem cell |
| 3 | chr12:51310600-51311400 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
