Variant report
| Variant | rs56979742 |
|---|---|
| Chromosome Location | chr12:51272592-51272593 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:51271631..51273564-chr12:51476067..51478746,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000110925 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs11169614 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11835513 | 1.00[AMR][1000 genomes] |
| rs12300872 | 0.85[AFR][1000 genomes] |
| rs17124979 | 1.00[AMR][1000 genomes] |
| rs17125085 | 1.00[AMR][1000 genomes] |
| rs17125212 | 1.00[AMR][1000 genomes] |
| rs17125227 | 1.00[AMR][1000 genomes] |
| rs17125245 | 1.00[AMR][1000 genomes] |
| rs56809906 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56840343 | 1.00[AMR][1000 genomes] |
| rs56883422 | 1.00[AMR][1000 genomes] |
| rs58343549 | 1.00[AMR][1000 genomes] |
| rs58493263 | 1.00[AMR][1000 genomes] |
| rs60089061 | 1.00[AMR][1000 genomes] |
| rs60610335 | 1.00[AMR][1000 genomes] |
| rs60720958 | 1.00[AMR][1000 genomes] |
| rs61550892 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7309789 | 1.00[AMR][1000 genomes] |
| rs7312269 | 1.00[AMR][1000 genomes] |
| rs73296205 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73297927 | 1.00[AMR][1000 genomes] |
| rs73297940 | 1.00[AMR][1000 genomes] |
| rs73297966 | 1.00[AMR][1000 genomes] |
| rs73298000 | 1.00[AMR][1000 genomes] |
| rs73300041 | 1.00[AMR][1000 genomes] |
| rs73308073 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73308091 | 1.00[AMR][1000 genomes] |
| rs73308094 | 1.00[AMR][1000 genomes] |
| rs73308096 | 1.00[AMR][1000 genomes] |
| rs73310009 | 1.00[AMR][1000 genomes] |
| rs73310019 | 1.00[AMR][1000 genomes] |
| rs73310024 | 1.00[AMR][1000 genomes] |
| rs73311230 | 1.00[AMR][1000 genomes] |
| rs73311252 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3414501 | chr12:51174503-51534707 | Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
| 2 | nsv899078 | chr12:51213433-51286750 | Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
