Variant report

Variant	rs568196695
Chromosome Location	chr18:28856330-28856331
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:28855249..28856898-chr18:28857462..28860362,2	MCF-7	breast:
2	chr18:28680050..28682025-chr18:28855320..28857563,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000265888	Chromatin interaction
ENSG00000134755	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1066692	chr18:28856066-29190505	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv543674	chr18:28856066-29190505	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28853800-28859400	Enhancers	HepG2	liver
2	chr18:28854200-28856400	Enhancers	Adipose Nuclei	Adipose
3	chr18:28854200-28856400	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr18:28854200-28856400	Enhancers	HMEC	breast
5	chr18:28854200-28856600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr18:28854200-28856600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr18:28854400-28857200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr18:28854800-28856600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr18:28854800-28857200	Enhancers	Hela-S3	cervix
10	chr18:28855000-28856400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr18:28855000-28856400	Enhancers	Fetal Heart	heart
12	chr18:28855000-28856400	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr18:28855000-28856600	Enhancers	Stomach Mucosa	stomach
14	chr18:28855200-28858400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr18:28855200-28858400	Weak transcription	Fetal Intestine Large	intestine
16	chr18:28855400-28860800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr18:28855600-28856400	Enhancers	NHEK	skin
18	chr18:28855600-28858400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr18:28855800-28858200	Weak transcription	Fetal Intestine Small	intestine
20	chr18:28856000-28857000	Weak transcription	Gastric	stomach
21	chr18:28856000-28860400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr18:28856000-28861200	Weak transcription	Left Ventricle	heart
23	chr18:28856200-28856400	Enhancers	A549	lung
24	chr18:28856200-28858400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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