Variant report

Variant	rs56821088
Chromosome Location	chr19:35667657-35667658
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:35665363..35668225-chr19:35738724..35741368,2	K562	blood:
2	chr19:35660634..35663962-chr19:35667353..35669168,3	K562	blood:
3	chr19:35666862..35669002-chr19:35676994..35679868,2	K562	blood:

Variant related genes	Relation type
ENSG00000105699	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10410144	0.92[EUR][1000 genomes]
rs10417952	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10417962	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12608443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12610110	0.85[EUR][1000 genomes]
rs13344454	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16970012	0.92[EUR][1000 genomes]
rs16970014	0.92[EUR][1000 genomes]
rs28434318	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4805109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4806097	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56115369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56263489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56298516	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56347218	0.86[EUR][1000 genomes]
rs59086958	0.88[EUR][1000 genomes]
rs61709658	0.85[EUR][1000 genomes]
rs8109080	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs886134	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs886135	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs886138	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv911616	chr19:35577870-35669071	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
3	esv2757694	chr19:35653642-35673333	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2758757	chr19:35653642-35673333	Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv2470	chr19:35655281-35702565	Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
7	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
8	nsv516540	chr19:35660450-35685536	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv817831	chr19:35661787-35673243	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv579368	chr19:35661787-35680002	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv579377	chr19:35662257-35673243	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35660800-35673400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr19:35661800-35668600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr19:35661800-35670000	Weak transcription	Thymus	Thymus
4	chr19:35661800-35673400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr19:35664000-35668200	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr19:35664000-35668200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr19:35664000-35669800	Weak transcription	Primary T cells from cord blood	blood
8	chr19:35664000-35669800	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr19:35664000-35670000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr19:35664200-35669600	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr19:35664200-35670400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr19:35664800-35668600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr19:35664800-35669800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr19:35664800-35670200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr19:35665000-35670200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr19:35665200-35670400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr19:35666000-35668400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr19:35666200-35668000	Enhancers	Placenta	Placenta
19	chr19:35667200-35669800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr19:35667400-35668800	Weak transcription	K562	blood
21	chr19:35667400-35670800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr19:35667600-35669200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr19:35667600-35669600	Weak transcription	Adipose Nuclei	Adipose
24	chr19:35667600-35670200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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