Variant report

Variant	rs56822445
Chromosome Location	chr15:51881302-51881303
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:51880604..51882848-chr15:51911429..51913182,2	K562	blood:
2	chr15:51828678..51829913-chr15:51881158..51882720,13	MCF-7	breast:
3	chr15:51880703..51883110-chr15:51892306..51895178,2	MCF-7	breast:
4	chr15:51876863..51879432-chr15:51880781..51882627,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16953073	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16964415	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16964418	0.87[AFR][1000 genomes]
rs16964419	0.87[AFR][1000 genomes]
rs16964433	0.87[AFR][1000 genomes]
rs35097381	0.87[AFR][1000 genomes]
rs60326784	0.82[AFR][1000 genomes]
rs73397548	1.00[AMR][1000 genomes]
rs73397550	1.00[AMR][1000 genomes]
rs73397592	1.00[AMR][1000 genomes]
rs73397599	1.00[AMR][1000 genomes]
rs73399515	1.00[AMR][1000 genomes]
rs73399545	1.00[AMR][1000 genomes]
rs73399577	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73399588	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73399594	1.00[AMR][1000 genomes]
rs73401408	0.87[AFR][1000 genomes]
rs73401422	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73407388	1.00[AMR][1000 genomes]
rs74013288	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv904217	chr15:51695653-51881980	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv569405	chr15:51791559-51890282	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv457138	chr15:51838719-51890282	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv569406	chr15:51838719-51890282	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv904219	chr15:51851999-51977159	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
7	nsv457139	chr15:51854718-51977159	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
8	nsv569407	chr15:51854718-51977159	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
9	nsv569408	chr15:51867172-51946100	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51869600-51889600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:51870800-51882400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:51871600-51881600	Weak transcription	Adipose Nuclei	Adipose
4	chr15:51875400-51891400	Weak transcription	K562	blood
5	chr15:51877800-51883000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr15:51880600-51882800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr15:51881000-51882200	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr15:51881000-51883000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr15:51881200-51882200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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