Variant report

Variant	rs56830225
Chromosome Location	chr5:107914788-107914789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11960182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55696477	0.87[AMR][1000 genomes]
rs56137163	0.87[AMR][1000 genomes]
rs56798026	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57029856	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57076978	0.85[AMR][1000 genomes]
rs57844963	0.87[AMR][1000 genomes]
rs57942258	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs58006814	0.87[AMR][1000 genomes]
rs58131274	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58157703	0.87[AMR][1000 genomes]
rs60021742	0.87[AMR][1000 genomes]
rs60844456	0.85[AMR][1000 genomes]
rs60977429	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73217628	0.86[AMR][1000 genomes]
rs73217641	0.87[AMR][1000 genomes]
rs73217643	0.87[AMR][1000 genomes]
rs73217647	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73217652	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv882690	chr5:107834247-107954485	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107911400-107916600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr5:107914200-107915400	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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