Variant report
| Variant | rs55696477 |
|---|---|
| Chromosome Location | chr5:107909599-107909600 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11960182 | 0.87[AMR][1000 genomes] |
| rs1421973 | 1.00[EUR][1000 genomes] |
| rs56137163 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56798026 | 0.92[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs56830225 | 0.87[AMR][1000 genomes] |
| rs57029856 | 0.87[AMR][1000 genomes] |
| rs57042813 | 1.00[EUR][1000 genomes] |
| rs57844963 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58006814 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58131274 | 0.92[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs58157703 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58975512 | 1.00[EUR][1000 genomes] |
| rs60021742 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60977429 | 0.85[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs73215896 | 1.00[EUR][1000 genomes] |
| rs73215897 | 1.00[EUR][1000 genomes] |
| rs73215898 | 1.00[EUR][1000 genomes] |
| rs73217627 | 0.83[AMR][1000 genomes] |
| rs73217641 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73217647 | 0.87[AMR][1000 genomes] |
| rs73217652 | 0.87[AMR][1000 genomes] |
| rs73778571 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv882689 | chr5:107595383-108299744 | Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 61 gene(s) | inside rSNPs | diseases |
| 2 | nsv882690 | chr5:107834247-107954485 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:107909400-107910400 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
