Variant report

Variant	rs73215897
Chromosome Location	chr5:107897519-107897520
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107884635..107887326-chr5:107896881..107899343,3	K562	blood:
2	chr5:107884635..107886852-chr5:107895762..107899343,3	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10070901	1.00[ASN][1000 genomes]
rs10070980	1.00[ASN][1000 genomes]
rs10078599	1.00[ASN][1000 genomes]
rs11959714	0.83[ASN][1000 genomes]
rs1421973	1.00[EUR][1000 genomes]
rs55696477	1.00[EUR][1000 genomes]
rs56137163	1.00[EUR][1000 genomes]
rs57042813	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57466548	1.00[ASN][1000 genomes]
rs57844963	1.00[EUR][1000 genomes]
rs58006814	1.00[EUR][1000 genomes]
rs58157703	1.00[EUR][1000 genomes]
rs58825061	1.00[ASN][1000 genomes]
rs58975512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59368137	0.83[ASN][1000 genomes]
rs60021742	1.00[EUR][1000 genomes]
rs73215896	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73215898	1.00[EUR][1000 genomes]
rs73217641	1.00[EUR][1000 genomes]
rs73778571	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9326736	1.00[ASN][1000 genomes]
rs9326738	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv882690	chr5:107834247-107954485	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107895400-107898400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:107895600-107897800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:107896000-107897600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:107896000-107897600	Enhancers	Adipose Nuclei	Adipose
5	chr5:107896000-107897600	Enhancers	Osteobl	bone
6	chr5:107896000-107898000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:107896400-107898400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:107896600-107897600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:107896600-107901000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr5:107896800-107901000	Weak transcription	Aorta	Aorta
11	chr5:107897000-107897800	Enhancers	NHDF-Ad	bronchial
12	chr5:107897000-107898400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr5:107897000-107898400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr5:107897200-107897600	Enhancers	H1 Cell Line	embryonic stem cell
15	chr5:107897200-107897800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr5:107897200-107897800	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr5:107897200-107898000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:107897200-107898200	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr5:107897200-107898200	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr5:107897200-107898400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:107897200-107898400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr5:107897200-107898400	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr5:107897400-107898200	Enhancers	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links