Variant report

Variant	rs57042813
Chromosome Location	chr5:107893558-107893559
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1421973	1.00[EUR][1000 genomes]
rs55696477	1.00[EUR][1000 genomes]
rs56137163	1.00[EUR][1000 genomes]
rs57844963	1.00[EUR][1000 genomes]
rs58006814	1.00[EUR][1000 genomes]
rs58157703	1.00[EUR][1000 genomes]
rs58825061	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58975512	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60021742	1.00[EUR][1000 genomes]
rs73215876	0.83[AMR][1000 genomes]
rs73215896	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73215897	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73215898	1.00[EUR][1000 genomes]
rs73217641	1.00[EUR][1000 genomes]
rs73778571	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv882690	chr5:107834247-107954485	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107890000-107897200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr5:107891400-107896400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:107891400-107897400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr5:107892400-107894000	Enhancers	K562	blood
5	chr5:107892600-107893600	Weak transcription	Fetal Stomach	stomach
6	chr5:107893000-107894000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
7	chr5:107893000-107896800	Weak transcription	Fetal Heart	heart
8	chr5:107893200-107893600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr5:107893200-107893600	Active TSS	Spleen	Spleen
10	chr5:107893400-107893800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr5:107893400-107893800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:107893400-107894000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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