Variant report

Variant	rs73215898
Chromosome Location	chr5:107898083-107898084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1421973	1.00[EUR][1000 genomes]
rs55696477	1.00[EUR][1000 genomes]
rs56137163	1.00[EUR][1000 genomes]
rs57042813	1.00[EUR][1000 genomes]
rs57844963	1.00[EUR][1000 genomes]
rs58006814	1.00[EUR][1000 genomes]
rs58157703	1.00[EUR][1000 genomes]
rs58975512	1.00[EUR][1000 genomes]
rs60021742	1.00[EUR][1000 genomes]
rs73215896	1.00[EUR][1000 genomes]
rs73215897	1.00[EUR][1000 genomes]
rs73217641	1.00[EUR][1000 genomes]
rs73778571	1.00[EUR][1000 genomes]
rs925198	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv882690	chr5:107834247-107954485	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107895400-107898400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:107896400-107898400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:107896600-107901000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:107896800-107901000	Weak transcription	Aorta	Aorta
5	chr5:107897000-107898400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr5:107897000-107898400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr5:107897200-107898200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr5:107897200-107898200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr5:107897200-107898400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:107897200-107898400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr5:107897200-107898400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr5:107897400-107898200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr5:107897600-107900400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr5:107897800-107898200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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