Variant report

Variant	rs925198
Chromosome Location	chr5:108006751-108006752
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs41326446	0.95[YRI][hapmap]
rs73215898	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1024076	chr5:107991426-108028223	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1034158	chr5:107995509-108018395	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv523619	chr5:107999505-108016782	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108006200-108007000	Enhancers	Brain Substantia Nigra	brain
2	chr5:108006200-108007200	Enhancers	Fetal Heart	heart
3	chr5:108006200-108007400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:108006200-108007400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr5:108006200-108007400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:108006200-108007400	Enhancers	Brain Angular Gyrus	brain
7	chr5:108006400-108006800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr5:108006400-108006800	Enhancers	Lung	lung
9	chr5:108006400-108007000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:108006400-108007000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:108006400-108007000	Enhancers	Fetal Lung	lung
12	chr5:108006400-108007000	Enhancers	Left Ventricle	heart
13	chr5:108006400-108007000	Enhancers	Right Atrium	heart
14	chr5:108006400-108007200	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr5:108006400-108007200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr5:108006400-108007200	Enhancers	HepG2	liver
17	chr5:108006400-108007200	Enhancers	HMEC	breast
18	chr5:108006400-108007400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:108006400-108007600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr5:108006600-108006800	Enhancers	Osteobl	bone
21	chr5:108006600-108007000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:108006600-108007000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr5:108006600-108007000	Enhancers	Brain Cingulate Gyrus	brain
24	chr5:108006600-108007000	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr5:108006600-108007000	Weak transcription	Pancreas	Pancrea
26	chr5:108006600-108007200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr5:108006600-108007400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr5:108006600-108008800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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