Variant report

Variant	rs9326738
Chromosome Location	chr5:107929239-107929240
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:107929180-107929344	GM12891	blood:	n/a	n/a
2	POLR2A	chr5:107929172-107929337	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
ENSG00000244245	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10064913	1.00[CHB][hapmap]
rs10070901	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10070980	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10071430	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10074023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs10078599	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10477914	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap]
rs10477915	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs10477916	1.00[CHB][hapmap];0.89[YRI][hapmap]
rs10477917	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[LWK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap]
rs11956327	1.00[CHB][hapmap]
rs11959714	0.83[ASN][1000 genomes]
rs57466548	1.00[ASN][1000 genomes]
rs58825061	1.00[ASN][1000 genomes]
rs58975512	1.00[ASN][1000 genomes]
rs59368137	0.83[ASN][1000 genomes]
rs6889248	0.85[EUR][1000 genomes]
rs73215896	1.00[ASN][1000 genomes]
rs73215897	1.00[ASN][1000 genomes]
rs73778571	1.00[ASN][1000 genomes]
rs7705492	1.00[CHB][hapmap]
rs7737618	1.00[CHB][hapmap]
rs9326735	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap]
rs9326736	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv882690	chr5:107834247-107954485	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107929000-107929400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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