Variant report

Variant	rs57466548
Chromosome Location	chr5:107898586-107898587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10070901	1.00[ASN][1000 genomes]
rs10070980	1.00[ASN][1000 genomes]
rs10078599	1.00[ASN][1000 genomes]
rs11959714	0.83[ASN][1000 genomes]
rs58049542	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58825061	1.00[ASN][1000 genomes]
rs58975512	1.00[ASN][1000 genomes]
rs59368137	0.83[ASN][1000 genomes]
rs73215896	1.00[ASN][1000 genomes]
rs73215897	1.00[ASN][1000 genomes]
rs73217603	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778571	1.00[ASN][1000 genomes]
rs7702209	1.00[AMR][1000 genomes]
rs7726596	1.00[AMR][1000 genomes]
rs9326736	1.00[ASN][1000 genomes]
rs9326738	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv882690	chr5:107834247-107954485	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107896600-107901000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:107896800-107901000	Weak transcription	Aorta	Aorta
3	chr5:107897600-107900400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr5:107898200-107899000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr5:107898200-107899800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr5:107898200-107900000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr5:107898400-107898600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:107898400-107899800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr5:107898400-107900000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr5:107898400-107900400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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