Variant report

Variant	rs56833680
Chromosome Location	chr1:196496280-196496281
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1339946	1.00[AMR][1000 genomes]
rs1361400	1.00[AMR][1000 genomes]
rs1361401	1.00[AMR][1000 genomes]
rs17698933	1.00[AMR][1000 genomes]
rs1928434	1.00[AMR][1000 genomes]
rs4113172	1.00[AMR][1000 genomes]
rs58349935	1.00[AMR][1000 genomes]
rs58705192	1.00[AMR][1000 genomes]
rs59339468	1.00[AMR][1000 genomes]
rs60233925	1.00[AMR][1000 genomes]
rs60344072	1.00[AMR][1000 genomes]
rs6662968	1.00[AMR][1000 genomes]
rs6675007	1.00[AMR][1000 genomes]
rs6677727	1.00[AMR][1000 genomes]
rs6701763	1.00[AMR][1000 genomes]
rs6703423	1.00[AMR][1000 genomes]
rs7512135	1.00[AMR][1000 genomes]
rs7514111	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931415	chr1:196270759-196744780	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1009233	chr1:196301712-196568874	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196480800-196504800	Weak transcription	Liver	Liver
2	chr1:196492200-196504800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:196492400-196504200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr1:196492400-196504800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:196493200-196502400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr1:196493600-196504000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:196495000-196500800	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links