Variant report

Variant	rs60344072
Chromosome Location	chr1:196462367-196462368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1339946	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1361400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1361401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17698933	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1928434	1.00[AMR][1000 genomes]
rs4113172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56729681	0.90[AFR][1000 genomes]
rs56833680	1.00[AMR][1000 genomes]
rs58349935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58705192	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59339468	1.00[AMR][1000 genomes]
rs60233925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6662968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6675007	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6677727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6701763	1.00[AMR][1000 genomes]
rs6703423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7512135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7514111	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931415	chr1:196270759-196744780	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1009233	chr1:196301712-196568874	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196436400-196485200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:196437400-196467800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr1:196447800-196468000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr1:196451400-196467600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr1:196452800-196471200	Weak transcription	Liver	Liver
6	chr1:196454400-196467400	Weak transcription	Ovary	ovary
7	chr1:196461200-196462800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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