Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:156270798..156273116-chr3:156373903..156376666,2	K562	blood:
2	chr3:156271563..156273116-chr3:156374621..156376666,2	K562	blood:
3	chr3:156374211..156376391-chr3:156391774..156393333,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SSR3-7	chr3:156359231-156383752	predAs_chen_BG181400_1

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10513495	0.84[EUR][1000 genomes]
rs1367312	0.90[EUR][1000 genomes]
rs1529581	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17373227	0.89[EUR][1000 genomes]
rs4364127	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55686038	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56128116	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56152727	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56245561	0.93[EUR][1000 genomes]
rs56354026	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56357051	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56960846	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58263861	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58822703	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59689193	1.00[ASN][1000 genomes]
rs60032002	0.82[ASN][1000 genomes]
rs60178381	1.00[ASN][1000 genomes]
rs73012038	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73012046	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73013957	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73019737	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73019748	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73019749	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs891463	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs919520	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs56836190	LINC00886	cis	Skin Sun Exposed Lower leg	GTEx
rs56836190	LINC00886	cis	Thyroid	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156360000-156376600	Weak transcription	Psoas Muscle	Psoas
2	chr3:156374400-156376200	Weak transcription	HSMMtube	muscle
3	chr3:156374600-156376200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:156375000-156378600	Weak transcription	GM12878-XiMat	blood
5	chr3:156375400-156376600	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr3:156375400-156377400	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr3:156375400-156377600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:156375600-156376600	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr3:156375600-156381800	Weak transcription	K562	blood
10	chr3:156375800-156376600	Enhancers	Colonic Mucosa	Colon

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