Variant report

Variant	rs60032002
Chromosome Location	chr3:156394598-156394599
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:15)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:15 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:156391392-156394830	MCF10A-Er-Src	breast:	n/a	n/a
2	MXI1	chr3:156391527-156396530	IMR90	lung:	n/a	n/a
3	CTCF	chr3:156391220-156394631	A549	lung:	n/a	chr3:156393431-156393449 chr3:156393432-156393448 chr3:156392243-156392256
4	MAZ	chr3:156391397-156394742	IMR90	lung:	n/a	chr3:156393246-156393256
5	POLR2A	chr3:156391210-156394847	MCF10A-Er-Src	breast:	n/a	n/a
6	CHD1	chr3:156391341-156402336	IMR90	lung:	n/a	chr3:156392500-156392510
7	CEBPB	chr3:156393165-156394739	Hela-S3	cervix:	n/a	n/a
8	POLR2A	chr3:156394202-156394599	Hela-S3	cervix:	n/a	n/a
9	CHD1	chr3:156391572-156394911	GM12878	blood:	n/a	chr3:156392500-156392510
10	HCFC1	chr3:156391031-156395068	Hela-S3	cervix:	n/a	n/a
11	POLR2A	chr3:156391987-156394803	A549	lung:	n/a	n/a
12	POLR2A	chr3:156391573-156394886	Hela-S3	cervix:	n/a	n/a
13	TBL1XR1	chr3:156394592-156394810	K562	blood:	n/a	n/a
14	POLR2A	chr3:156391741-156395648	IMR90	lung:	n/a	n/a
15	E2F4	chr3:156394282-156394791	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:156390449..156395705-chr3:156876136..156879645,10	MCF-7	breast:
2	chr3:156391970..156394815-chr3:156799472..156801135,3	MCF-7	breast:
3	chr3:156391796..156394617-chr3:156542307..156544876,4	K562	blood:
4	chr3:156268357..156274553-chr3:156389283..156394606,15	MCF-7	breast:
5	chr3:156389452..156396391-chr3:156801976..156809206,19	MCF-7	breast:
6	chr3:156388866..156397270-chr3:156524172..156537549,71	MCF-7	breast:
7	chr3:156391251..156395598-chr3:156875832..156879722,8	K562	blood:
8	chr3:156260735..156275674-chr3:156389736..156397850,44	K562	blood:
9	chr3:156389670..156395497-chr3:156530360..156537244,22	MCF-7	breast:
10	chr3:156390293..156396385-chr3:156542364..156548172,18	MCF-7	breast:
11	chr3:156390535..156395368-chr3:156542467..156546251,7	MCF-7	breast:
12	chr3:156264459..156269953-chr3:156392362..156396309,4	K562	blood:

No data

Variant related genes	Relation type
TIPARP-AS1	TF binding region
TIPARP	TF binding region
ENSG00000240875	Chromatin interaction
ENSG00000241544	Chromatin interaction
ENSG00000241135	Chromatin interaction
ENSG00000230457	Chromatin interaction
ENSG00000114850	Chromatin interaction
ENSG00000197980	Chromatin interaction
ENSG00000163660	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1529581	1.00[ASN][1000 genomes]
rs4364127	1.00[ASN][1000 genomes]
rs55686038	1.00[ASN][1000 genomes]
rs55748213	0.92[ASN][1000 genomes]
rs56128116	0.82[ASN][1000 genomes]
rs56152727	1.00[ASN][1000 genomes]
rs56354026	1.00[ASN][1000 genomes]
rs56357051	0.82[ASN][1000 genomes]
rs56836190	0.82[ASN][1000 genomes]
rs56960846	0.82[ASN][1000 genomes]
rs58263861	0.82[ASN][1000 genomes]
rs58822703	1.00[ASN][1000 genomes]
rs59689193	0.82[ASN][1000 genomes]
rs60178381	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73013957	0.82[ASN][1000 genomes]
rs73019737	1.00[ASN][1000 genomes]
rs73019748	1.00[ASN][1000 genomes]
rs73019749	0.82[ASN][1000 genomes]
rs891463	1.00[ASN][1000 genomes]
rs919520	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156391400-156394600	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr3:156391400-156395000	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr3:156391400-156395000	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr3:156391400-156395200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:156391400-156395200	Active TSS	Duodenum Smooth Muscle	Duodenum
6	chr3:156391400-156395200	Active TSS	Psoas Muscle	Psoas
7	chr3:156391600-156394600	Active TSS	Lung	lung
8	chr3:156391600-156394600	Active TSS	HSMM	muscle
9	chr3:156391600-156394800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:156391600-156394800	Active TSS	Left Ventricle	heart
11	chr3:156391600-156395000	Active TSS	Brain Angular Gyrus	brain
12	chr3:156391600-156395200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr3:156391600-156395200	Active TSS	Ovary	ovary
14	chr3:156391600-156395200	Active TSS	NH-A	brain
15	chr3:156391600-156395400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:156391600-156395400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:156391600-156395400	Active TSS	Right Atrium	heart
18	chr3:156391600-156395400	Active TSS	Right Ventricle	heart
19	chr3:156391600-156395400	Active TSS	GM12878-XiMat	blood
20	chr3:156391600-156395600	Active TSS	HSMMtube	muscle
21	chr3:156391800-156394600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:156391800-156394600	Active TSS	NHEK	skin
23	chr3:156391800-156395400	Active TSS	NHLF	lung
24	chr3:156392000-156395400	Active TSS	HMEC	breast
25	chr3:156392400-156394600	Flanking Active TSS	Primary B cells from cord blood	blood
26	chr3:156392600-156394800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr3:156393000-156394600	Active TSS	Brain Germinal Matrix	brain
28	chr3:156393000-156398800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:156393400-156394600	Flanking Active TSS	Fetal Brain Female	brain
30	chr3:156393400-156394800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
31	chr3:156393600-156394600	Flanking Active TSS	Dnd41	blood
32	chr3:156393600-156394800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr3:156393600-156395000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
34	chr3:156393600-156395000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
35	chr3:156393600-156395000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr3:156393600-156395600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr3:156393600-156401800	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
38	chr3:156393800-156394600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr3:156393800-156394600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr3:156393800-156394600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
41	chr3:156393800-156394600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
42	chr3:156393800-156394600	Flanking Active TSS	Liver	Liver
43	chr3:156393800-156394600	Flanking Active TSS	Brain Anterior Caudate	brain
44	chr3:156393800-156394600	Flanking Active TSS	Brain Hippocampus Middle	brain
45	chr3:156393800-156394600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
46	chr3:156393800-156394800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
47	chr3:156393800-156395000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
48	chr3:156393800-156395200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
49	chr3:156393800-156395400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr3:156393800-156396600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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