Variant report

Variant	rs56837449
Chromosome Location	chr6:131690728-131690729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs6919802	1.00[EUR][1000 genomes]
rs7774923	1.00[EUR][1000 genomes]
rs9483263	1.00[EUR][1000 genomes]
rs9483266	1.00[EUR][1000 genomes]
rs9483267	1.00[EUR][1000 genomes]
rs9492938	1.00[EUR][1000 genomes]
rs9492939	1.00[EUR][1000 genomes]
rs9492940	1.00[EUR][1000 genomes]
rs9492943	1.00[EUR][1000 genomes]
rs9492945	1.00[EUR][1000 genomes]
rs9492946	1.00[EUR][1000 genomes]
rs9492947	1.00[EUR][1000 genomes]
rs9492948	1.00[EUR][1000 genomes]
rs9492950	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv886664	chr6:131443843-131754930	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv830808	chr6:131521115-131735320	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131685000-131702400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:131686400-131690800	Enhancers	Primary B cells from peripheral blood	blood
3	chr6:131687600-131705800	Weak transcription	Gastric	stomach
4	chr6:131688400-131690800	Enhancers	Fetal Brain Female	brain
5	chr6:131689000-131705000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:131689200-131690800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:131689200-131690800	Enhancers	Adipose Nuclei	Adipose
8	chr6:131689400-131690800	Enhancers	Brain Angular Gyrus	brain
9	chr6:131689400-131691000	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr6:131689400-131691200	Enhancers	Fetal Brain Male	brain
11	chr6:131689600-131690800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:131690000-131690800	Enhancers	Primary B cells from cord blood	blood
13	chr6:131690000-131690800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:131690000-131691800	Weak transcription	Thymus	Thymus
15	chr6:131690000-131693000	Weak transcription	Osteobl	bone
16	chr6:131690000-131693200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:131690000-131694400	Weak transcription	Fetal Muscle Trunk	muscle
18	chr6:131690000-131711200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr6:131690200-131693000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:131690200-131704400	Weak transcription	Primary T cells from cord blood	blood
21	chr6:131690400-131690800	Enhancers	Pancreas	Pancrea
22	chr6:131690400-131692800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:131690600-131691400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links