Variant report

Variant	rs9483267
Chromosome Location	chr6:131693960-131693961
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs56837449	1.00[EUR][1000 genomes]
rs6919802	1.00[EUR][1000 genomes]
rs7774923	1.00[EUR][1000 genomes]
rs9483263	1.00[EUR][1000 genomes]
rs9483264	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9483266	1.00[EUR][1000 genomes]
rs9492938	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9492939	1.00[EUR][1000 genomes]
rs9492940	1.00[EUR][1000 genomes]
rs9492943	1.00[EUR][1000 genomes]
rs9492945	1.00[EUR][1000 genomes]
rs9492946	1.00[EUR][1000 genomes]
rs9492947	1.00[EUR][1000 genomes]
rs9492948	1.00[EUR][1000 genomes]
rs9492950	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv886664	chr6:131443843-131754930	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv830808	chr6:131521115-131735320	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131685000-131702400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:131687600-131705800	Weak transcription	Gastric	stomach
3	chr6:131689000-131705000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:131690000-131694400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:131690000-131711200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr6:131690200-131704400	Weak transcription	Primary T cells from cord blood	blood
7	chr6:131693000-131694600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:131693000-131694600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:131693000-131694600	Enhancers	Osteobl	bone
10	chr6:131693200-131694400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:131693600-131694200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:131693800-131694200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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