Variant report

Variant	rs568376639
Chromosome Location	chr15:42047989-42047990
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049514	chr15:41958482-42081210	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1048655	chr15:41978391-42049360	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
4	nsv1036086	chr15:42004962-42091451	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1041861	chr15:42016097-42062287	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1054671	chr15:42016097-42098896	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv1044347	chr15:42023805-42049360	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1038894	chr15:42038152-42077452	Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
9	esv2757597	chr15:42047173-42122617	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	esv2760027	chr15:42047173-42122617	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41972400-42065200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:42003800-42056000	Weak transcription	Colonic Mucosa	Colon
3	chr15:42009800-42056800	Weak transcription	Fetal Heart	heart
4	chr15:42017400-42062600	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr15:42019400-42060600	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr15:42025200-42065400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr15:42029000-42052200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr15:42029000-42054200	Weak transcription	Small Intestine	intestine
9	chr15:42029200-42048400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr15:42035400-42054400	Weak transcription	Pancreas	Pancrea
11	chr15:42035800-42058200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:42036000-42052800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:42036000-42058400	Weak transcription	Psoas Muscle	Psoas
14	chr15:42038800-42051000	Strong transcription	Primary B cells from peripheral blood	blood
15	chr15:42039000-42064400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:42039600-42049000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:42039600-42062600	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr15:42039800-42049200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr15:42040000-42049600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr15:42040000-42061400	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr15:42040200-42048400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr15:42040200-42049400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr15:42040200-42059800	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr15:42040200-42064400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr15:42040600-42063000	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr15:42041600-42054600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr15:42041800-42053400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr15:42041800-42055800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr15:42041800-42056800	Weak transcription	Esophagus	oesophagus
30	chr15:42041800-42058200	Weak transcription	Gastric	stomach
31	chr15:42042000-42053000	Weak transcription	HMEC	breast
32	chr15:42042000-42053600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr15:42042000-42057000	Weak transcription	Right Ventricle	heart
34	chr15:42042000-42057200	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr15:42042200-42055800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr15:42042400-42048600	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr15:42042400-42054600	Weak transcription	Rectal Smooth Muscle	rectum
38	chr15:42042400-42054800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr15:42042600-42054200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr15:42042600-42054200	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr15:42042600-42054400	Weak transcription	A549	lung
42	chr15:42042600-42056600	Weak transcription	Aorta	Aorta
43	chr15:42042600-42056600	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr15:42042800-42052000	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr15:42042800-42052400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr15:42042800-42054600	Weak transcription	Lung	lung
47	chr15:42042800-42055000	Weak transcription	Brain Hippocampus Middle	brain
48	chr15:42042800-42055800	Weak transcription	HSMMtube	muscle
49	chr15:42042800-42056200	Weak transcription	Brain Substantia Nigra	brain
50	chr15:42042800-42057200	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links