Variant report

Variant	rs56842110
Chromosome Location	chr4:57159109-57159110
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57569247	1.00[AFR][1000 genomes]
rs73817459	1.00[AFR][1000 genomes]
rs73817461	1.00[AFR][1000 genomes]
rs73817464	1.00[AFR][1000 genomes]
rs73817476	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999639	chr4:56942917-57401310	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1014045	chr4:56942917-57404511	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv3415289	chr4:57063312-57236755	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv829940	chr4:57072341-57262730	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57133800-57162800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:57149400-57179400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:57149800-57159600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:57152200-57166200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:57152200-57173600	Weak transcription	Fetal Stomach	stomach
6	chr4:57156400-57159800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:57156600-57167400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr4:57156800-57162000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr4:57156800-57162200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr4:57156800-57166000	Weak transcription	Thymus	Thymus
11	chr4:57156800-57167200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:57156800-57177800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr4:57157000-57159600	Weak transcription	Fetal Intestine Small	intestine
14	chr4:57157000-57162200	Weak transcription	Small Intestine	intestine
15	chr4:57157000-57162200	Weak transcription	Stomach Mucosa	stomach
16	chr4:57157000-57162600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:57158000-57159600	Weak transcription	Fetal Intestine Large	intestine
18	chr4:57158000-57160000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr4:57158400-57166400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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