Variant report

Variant	rs73817476
Chromosome Location	chr4:57156185-57156186
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr4:57155891-57156190	T-47D	breast:	n/a	n/a
2	RAD21	chr4:57156156-57156307	SK-N-SH_RA	brain:	n/a	n/a

Variant related genes	Relation type
RNU6-197P	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56842110	1.00[AFR][1000 genomes]
rs57569247	1.00[AFR][1000 genomes]
rs73817459	1.00[AFR][1000 genomes]
rs73817461	1.00[AFR][1000 genomes]
rs73817464	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999639	chr4:56942917-57401310	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1014045	chr4:56942917-57404511	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv3415289	chr4:57063312-57236755	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv829940	chr4:57072341-57262730	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57098800-57158400	Weak transcription	Fetal Brain Female	brain
2	chr4:57133800-57162800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:57149400-57179400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:57149800-57159600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:57150200-57156600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr4:57150400-57157000	Weak transcription	Brain Germinal Matrix	brain
7	chr4:57151400-57156800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:57152200-57158200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:57152200-57166200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:57152200-57173600	Weak transcription	Fetal Stomach	stomach
11	chr4:57154000-57158200	Enhancers	Primary T cells from cord blood	blood
12	chr4:57155200-57156400	Weak transcription	Stomach Mucosa	stomach
13	chr4:57155600-57156200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:57155600-57156200	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr4:57155600-57156600	Genic enhancers	Fetal Intestine Small	intestine
16	chr4:57155800-57156200	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr4:57155800-57156200	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr4:57155800-57156200	Active TSS	Brain Substantia Nigra	brain
19	chr4:57155800-57156400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr4:57155800-57156600	Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr4:57155800-57156600	Active TSS	Pancreatic Islets	Pancreatic Islet
22	chr4:57155800-57157400	Enhancers	Fetal Thymus	thymus
23	chr4:57156000-57156200	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr4:57156000-57156200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr4:57156000-57156200	Flanking Active TSS	Brain Hippocampus Middle	brain
26	chr4:57156000-57156200	Active TSS	Duodenum Mucosa	Duodenum
27	chr4:57156000-57156400	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr4:57156000-57156400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr4:57156000-57156400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr4:57156000-57156400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr4:57156000-57156400	Active TSS	Brain Anterior Caudate	brain
32	chr4:57156000-57156400	Active TSS	Brain Cingulate Gyrus	brain
33	chr4:57156000-57156400	Flanking Active TSS	Colonic Mucosa	Colon
34	chr4:57156000-57156400	Flanking Active TSS	Fetal Intestine Large	intestine
35	chr4:57156000-57156400	Active TSS	Rectal Mucosa Donor 29	rectum
36	chr4:57156000-57156400	Active TSS	Rectal Mucosa Donor 31	rectum
37	chr4:57156000-57156400	Active TSS	Rectal Smooth Muscle	rectum
38	chr4:57156000-57156400	Enhancers	GM12878-XiMat	blood
39	chr4:57156000-57156400	Active TSS	NHDF-Ad	bronchial
40	chr4:57156000-57156600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr4:57156000-57156600	Active TSS	Primary T helper naive cells from peripheral blood	blood
42	chr4:57156000-57156600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr4:57156000-57156600	Active TSS	Brain Inferior Temporal Lobe	brain
44	chr4:57156000-57156600	Active TSS	Stomach Smooth Muscle	stomach
45	chr4:57156000-57156600	Flanking Active TSS	Dnd41	blood
46	chr4:57156000-57156600	Active TSS	Osteobl	bone
47	chr4:57156000-57156800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr4:57156000-57156800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr4:57156000-57156800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
50	chr4:57156000-57156800	Enhancers	Placenta Amnion	Placenta Amnion

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