Variant report

Variant	rs56845638
Chromosome Location	chr4:76457009-76457010
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:76438065..76440830-chr4:76454852..76457629,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163743	Chromatin interaction
ENSG00000174796	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17000594	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17000597	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs17000603	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6849334	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594687	chr4:76154064-76502748	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv534570	chr4:76214619-76498362	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76440400-76458000	Weak transcription	Spleen	Spleen
2	chr4:76440400-76458800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:76440400-76466400	Weak transcription	Small Intestine	intestine
4	chr4:76440400-76473200	Weak transcription	Gastric	stomach
5	chr4:76440800-76457400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:76440800-76458600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr4:76441400-76457400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr4:76441600-76457400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:76441600-76457600	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr4:76441600-76458600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr4:76441600-76459200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:76441800-76458000	Strong transcription	Primary B cells from peripheral blood	blood
13	chr4:76443000-76457600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr4:76443200-76458800	Weak transcription	Stomach Mucosa	stomach
15	chr4:76443400-76470200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr4:76444400-76457400	Weak transcription	Hela-S3	cervix
17	chr4:76444400-76461000	Weak transcription	A549	lung
18	chr4:76444400-76471800	Weak transcription	Fetal Brain Male	brain
19	chr4:76445600-76457600	Strong transcription	Duodenum Mucosa	Duodenum
20	chr4:76445800-76458600	Strong transcription	Liver	Liver
21	chr4:76446200-76458200	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr4:76446200-76458400	Strong transcription	Primary T helper cells PMA-I stimulated	--
23	chr4:76446200-76458400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr4:76446800-76458000	Strong transcription	Adipose Nuclei	Adipose
25	chr4:76447200-76458200	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr4:76447600-76457200	Strong transcription	Fetal Intestine Large	intestine
27	chr4:76450000-76457400	Strong transcription	H1 Cell Line	embryonic stem cell
28	chr4:76450200-76458400	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr4:76450400-76458400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr4:76450800-76457200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr4:76450800-76458800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr4:76451000-76458200	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr4:76451200-76457200	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr4:76451400-76457400	Weak transcription	NHEK	skin
35	chr4:76451600-76474400	Weak transcription	Psoas Muscle	Psoas
36	chr4:76451800-76457600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr4:76452600-76468000	Weak transcription	NHLF	lung
38	chr4:76452600-76477400	Weak transcription	Colon Smooth Muscle	Colon
39	chr4:76453200-76473600	Weak transcription	Brain Angular Gyrus	brain
40	chr4:76454200-76458800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr4:76454600-76457400	Strong transcription	Fetal Muscle Trunk	muscle
42	chr4:76454600-76458800	Strong transcription	Primary T cells from cord blood	blood
43	chr4:76454600-76459000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr4:76454600-76459000	Strong transcription	Fetal Lung	lung
45	chr4:76454800-76458000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr4:76454800-76459200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr4:76455000-76469400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr4:76455000-76470200	Weak transcription	Brain Substantia Nigra	brain
49	chr4:76455000-76470800	Weak transcription	NHDF-Ad	bronchial
50	chr4:76455200-76457800	Strong transcription	Brain Hippocampus Middle	brain

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