Variant report

Variant	rs6849334
Chromosome Location	chr4:76457670-76457671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17000594	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17000597	0.95[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs17000603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56845638	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594687	chr4:76154064-76502748	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv534570	chr4:76214619-76498362	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76440400-76458000	Weak transcription	Spleen	Spleen
2	chr4:76440400-76458800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:76440400-76466400	Weak transcription	Small Intestine	intestine
4	chr4:76440400-76473200	Weak transcription	Gastric	stomach
5	chr4:76440800-76458600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:76441600-76458600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr4:76441600-76459200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:76441800-76458000	Strong transcription	Primary B cells from peripheral blood	blood
9	chr4:76443200-76458800	Weak transcription	Stomach Mucosa	stomach
10	chr4:76443400-76470200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr4:76444400-76461000	Weak transcription	A549	lung
12	chr4:76444400-76471800	Weak transcription	Fetal Brain Male	brain
13	chr4:76445800-76458600	Strong transcription	Liver	Liver
14	chr4:76446200-76458200	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr4:76446200-76458400	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr4:76446200-76458400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr4:76446800-76458000	Strong transcription	Adipose Nuclei	Adipose
18	chr4:76447200-76458200	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr4:76450200-76458400	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr4:76450400-76458400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr4:76450800-76458800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr4:76451000-76458200	Strong transcription	Duodenum Smooth Muscle	Duodenum
23	chr4:76451600-76474400	Weak transcription	Psoas Muscle	Psoas
24	chr4:76452600-76468000	Weak transcription	NHLF	lung
25	chr4:76452600-76477400	Weak transcription	Colon Smooth Muscle	Colon
26	chr4:76453200-76473600	Weak transcription	Brain Angular Gyrus	brain
27	chr4:76454200-76458800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr4:76454600-76458800	Strong transcription	Primary T cells from cord blood	blood
29	chr4:76454600-76459000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr4:76454600-76459000	Strong transcription	Fetal Lung	lung
31	chr4:76454800-76458000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr4:76454800-76459200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr4:76455000-76469400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr4:76455000-76470200	Weak transcription	Brain Substantia Nigra	brain
35	chr4:76455000-76470800	Weak transcription	NHDF-Ad	bronchial
36	chr4:76455200-76457800	Strong transcription	Brain Hippocampus Middle	brain
37	chr4:76455200-76458800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr4:76455400-76457800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
39	chr4:76455400-76457800	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr4:76455400-76458400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr4:76455400-76458800	Strong transcription	Placenta Amnion	Placenta Amnion
42	chr4:76455400-76459000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr4:76455800-76457800	Weak transcription	Rectal Smooth Muscle	rectum
44	chr4:76455800-76458000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr4:76455800-76458200	Strong transcription	Thymus	Thymus
46	chr4:76456000-76458000	ZNF genes & repeats	Fetal Brain Female	brain
47	chr4:76456000-76458200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr4:76456000-76458200	ZNF genes & repeats	Ovary	ovary
49	chr4:76456000-76458200	Strong transcription	Pancreas	Pancrea
50	chr4:76456000-76459000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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