Variant report

Variant	rs56847881
Chromosome Location	chr7:139564846-139564847
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17161175	1.00[EUR][1000 genomes]
rs17161190	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17161194	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17161198	0.90[EUR][1000 genomes]
rs17161199	1.00[EUR][1000 genomes]
rs17161200	1.00[EUR][1000 genomes]
rs17161201	1.00[EUR][1000 genomes]
rs55723240	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56380154	1.00[EUR][1000 genomes]
rs58206741	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59134510	1.00[EUR][1000 genomes]
rs59445537	1.00[EUR][1000 genomes]
rs60560151	1.00[EUR][1000 genomes]
rs73734120	1.00[EUR][1000 genomes]
rs73734125	1.00[EUR][1000 genomes]
rs73734133	1.00[EUR][1000 genomes]
rs9886179	0.90[EUR][1000 genomes]
rs9886217	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020234	chr7:139377822-139661964	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032711	chr7:139411404-139684043	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv464732	chr7:139424022-139654256	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv608472	chr7:139424022-139654256	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1018712	chr7:139429703-139658014	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv831156	chr7:139532318-139694326	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1019001	chr7:139558216-139841268	Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv1029099	chr7:139558216-139869148	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv970427	chr7:139563088-139566029	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139531400-139572600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr7:139553800-139570400	Weak transcription	Right Atrium	heart
3	chr7:139555600-139569800	Weak transcription	Lung	lung
4	chr7:139555600-139571800	Weak transcription	Thymus	Thymus
5	chr7:139560600-139572000	Weak transcription	Fetal Thymus	thymus
6	chr7:139563000-139568800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr7:139563200-139565400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
8	chr7:139563200-139566400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr7:139563400-139565400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
10	chr7:139563600-139565000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
11	chr7:139564400-139565000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
12	chr7:139564400-139565200	ZNF genes & repeats	Aorta	Aorta
13	chr7:139564600-139565200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:139564800-139565200	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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