Variant report

Variant	rs58206741
Chromosome Location	chr7:139569962-139569963
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:139563901..139566062-chr7:139568155..139570691,2	K562	blood:
2	chr7:139568957..139570819-chr7:139574917..139577389,2	MCF-7	breast:
3	chr7:139552572..139554625-chr7:139568144..139570351,2	K562	blood:
4	chr7:139569773..139572484-chr7:139574430..139577098,5	K562	blood:
5	chr7:139569956..139571774-chr7:139572106..139574390,3	K562	blood:
6	chr7:139569956..139571774-chr7:139571776..139574105,3	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17161175	1.00[EUR][1000 genomes]
rs17161190	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17161194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17161198	0.90[EUR][1000 genomes]
rs17161199	1.00[EUR][1000 genomes]
rs17161200	1.00[EUR][1000 genomes]
rs17161201	1.00[EUR][1000 genomes]
rs55723240	1.00[EUR][1000 genomes]
rs56380154	1.00[EUR][1000 genomes]
rs56847881	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59134510	1.00[EUR][1000 genomes]
rs59445537	1.00[EUR][1000 genomes]
rs60560151	1.00[EUR][1000 genomes]
rs73734120	1.00[EUR][1000 genomes]
rs73734125	1.00[EUR][1000 genomes]
rs73734133	1.00[EUR][1000 genomes]
rs9886179	0.90[EUR][1000 genomes]
rs9886217	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020234	chr7:139377822-139661964	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032711	chr7:139411404-139684043	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv464732	chr7:139424022-139654256	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv608472	chr7:139424022-139654256	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1018712	chr7:139429703-139658014	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv831156	chr7:139532318-139694326	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1019001	chr7:139558216-139841268	Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv1029099	chr7:139558216-139869148	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139531400-139572600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr7:139553800-139570400	Weak transcription	Right Atrium	heart
3	chr7:139555600-139571800	Weak transcription	Thymus	Thymus
4	chr7:139560600-139572000	Weak transcription	Fetal Thymus	thymus
5	chr7:139565200-139570400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:139565200-139570600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr7:139565200-139571400	Weak transcription	Aorta	Aorta
8	chr7:139566200-139571400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:139567400-139598400	Weak transcription	Primary T cells from cord blood	blood
10	chr7:139568000-139571800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:139568400-139570000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr7:139568600-139570200	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr7:139568800-139574600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr7:139569600-139571000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr7:139569600-139574600	Strong transcription	Primary hematopoietic stem cells	blood
16	chr7:139569800-139570000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
17	chr7:139569800-139570000	Enhancers	Primary B cells from cord blood	blood
18	chr7:139569800-139570000	Enhancers	Duodenum Mucosa	Duodenum
19	chr7:139569800-139570000	Enhancers	Fetal Brain Male	brain
20	chr7:139569800-139570000	Enhancers	Lung	lung
21	chr7:139569800-139570200	Enhancers	Brain Germinal Matrix	brain
22	chr7:139569800-139570600	Weak transcription	Placenta	Placenta
23	chr7:139569800-139572600	Weak transcription	Spleen	Spleen
24	chr7:139569800-139575600	Weak transcription	Small Intestine	intestine

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