Variant report

Variant	rs56855343
Chromosome Location	chr12:26230580-26230581
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12579157	0.89[AFR][1000 genomes]
rs12581690	0.89[AFR][1000 genomes]
rs35823259	0.89[AFR][1000 genomes]
rs60565171	0.89[AFR][1000 genomes]
rs60889945	1.00[AFR][1000 genomes]
rs7133634	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7133818	0.90[AFR][1000 genomes]
rs7304177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7304311	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv976037	chr12:26228360-26244803	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26201200-26234600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:26201600-26236200	Weak transcription	Right Ventricle	heart
3	chr12:26208400-26234600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr12:26211600-26234600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr12:26211800-26230800	Weak transcription	Fetal Lung	lung
6	chr12:26215800-26230800	Weak transcription	A549	lung
7	chr12:26216000-26230600	Weak transcription	HMEC	breast
8	chr12:26216000-26230800	Weak transcription	NHLF	lung
9	chr12:26216000-26231000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr12:26216200-26230800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr12:26216200-26231000	Weak transcription	NH-A	brain
12	chr12:26221800-26230800	Weak transcription	Fetal Stomach	stomach
13	chr12:26221800-26234000	Weak transcription	Fetal Intestine Small	intestine
14	chr12:26222000-26230800	Weak transcription	NHEK	skin
15	chr12:26222000-26234600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr12:26222400-26234000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr12:26222800-26245800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr12:26223200-26230800	Weak transcription	Osteobl	bone
19	chr12:26223400-26230600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr12:26224000-26230800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr12:26224000-26234000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr12:26226200-26230800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr12:26228000-26231000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr12:26228800-26230600	Weak transcription	NHDF-Ad	bronchial
25	chr12:26229000-26233600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr12:26229000-26234000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr12:26229000-26234600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr12:26229000-26235000	Weak transcription	Aorta	Aorta
29	chr12:26229200-26230600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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