Variant report

Variant	rs12579157
Chromosome Location	chr12:26231178-26231179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10505990	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10505991	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12579146	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12579489	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12581098	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12581361	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12581690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495660	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16929973	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16930084	0.82[AFR][1000 genomes]
rs2271481	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35823259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3741546	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3741547	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56855343	0.89[AFR][1000 genomes]
rs57278012	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs58299475	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs59757232	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs60565171	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60889945	0.89[AFR][1000 genomes]
rs61409057	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61915680	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7133634	0.84[AFR][1000 genomes]
rs7133818	0.80[AFR][1000 genomes]
rs7304177	0.89[AFR][1000 genomes]
rs7304311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7309394	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7313961	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs954476	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv976037	chr12:26228360-26244803	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26201200-26234600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:26201600-26236200	Weak transcription	Right Ventricle	heart
3	chr12:26208400-26234600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr12:26211600-26234600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr12:26221800-26234000	Weak transcription	Fetal Intestine Small	intestine
6	chr12:26222000-26234600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr12:26222400-26234000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr12:26222800-26245800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr12:26224000-26234000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr12:26229000-26233600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr12:26229000-26234000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr12:26229000-26234600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr12:26229000-26235000	Weak transcription	Aorta	Aorta
14	chr12:26230600-26231400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr12:26230600-26231400	Enhancers	HMEC	breast
16	chr12:26230600-26231400	Enhancers	NHDF-Ad	bronchial
17	chr12:26230800-26231200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr12:26230800-26231200	Enhancers	Fetal Stomach	stomach
19	chr12:26230800-26231400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr12:26230800-26231400	Enhancers	A549	lung
21	chr12:26230800-26231400	Enhancers	NHEK	skin
22	chr12:26230800-26231600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr12:26230800-26232000	Enhancers	Fetal Lung	lung
24	chr12:26231000-26231200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr12:26231000-26231200	Enhancers	NH-A	brain
26	chr12:26231000-26232000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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