Variant report

Variant	rs12579489
Chromosome Location	chr12:26214997-26214998
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26212512..26214260-chr12:26214676..26217188,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10505990	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10505991	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10842653	0.82[JPT][hapmap];0.81[AMR][1000 genomes]
rs11048378	0.83[JPT][hapmap];0.82[AMR][1000 genomes]
rs11048379	0.83[JPT][hapmap];0.82[AMR][1000 genomes]
rs11048380	0.83[JPT][hapmap];0.81[AMR][1000 genomes]
rs11048383	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11048384	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11048389	0.81[AMR][1000 genomes]
rs11048390	0.82[AMR][1000 genomes]
rs1120064	0.82[JPT][hapmap]
rs12227689	0.81[AMR][1000 genomes]
rs12578169	0.82[JPT][hapmap];0.92[AMR][1000 genomes]
rs12579146	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12579157	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12581098	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12581361	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12581690	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12812200	0.80[AMR][1000 genomes]
rs12812752	0.83[JPT][hapmap];0.81[AMR][1000 genomes]
rs12813641	0.82[AMR][1000 genomes]
rs12818478	0.82[AMR][1000 genomes]
rs1390326	0.82[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1495660	0.94[CHB][hapmap];0.91[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16929830	0.82[AMR][1000 genomes]
rs16929940	0.83[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs16929945	0.83[JPT][hapmap];0.92[AMR][1000 genomes]
rs16929950	0.83[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs16929958	0.82[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs16929973	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2055180	0.82[JPT][hapmap];0.83[AMR][1000 genomes]
rs2132317	0.81[AMR][1000 genomes]
rs2271481	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2343201	0.82[AMR][1000 genomes]
rs2643941	0.81[AMR][1000 genomes]
rs34294573	0.84[AMR][1000 genomes]
rs35823259	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs35924984	0.81[AMR][1000 genomes]
rs3741546	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3741547	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3803009	0.82[AMR][1000 genomes]
rs57278012	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58299475	1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs59757232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs60335536	0.92[AMR][1000 genomes]
rs60565171	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61409057	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61622173	0.81[AMR][1000 genomes]
rs6487525	0.82[JPT][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7132590	0.82[AMR][1000 genomes]
rs7304311	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7309394	0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7313961	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7953171	0.81[AMR][1000 genomes]
rs7963856	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs954476	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26192400-26228600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:26196400-26219800	Weak transcription	Fetal Kidney	kidney
3	chr12:26197200-26228600	Weak transcription	Aorta	Aorta
4	chr12:26199200-26220200	Weak transcription	Brain Substantia Nigra	brain
5	chr12:26199400-26221600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr12:26200800-26229000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr12:26201000-26220800	Weak transcription	Left Ventricle	heart
8	chr12:26201000-26223400	Weak transcription	Fetal Muscle Leg	muscle
9	chr12:26201200-26234600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr12:26201400-26221600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr12:26201600-26215400	Weak transcription	Psoas Muscle	Psoas
12	chr12:26201600-26236200	Weak transcription	Right Ventricle	heart
13	chr12:26205400-26215400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr12:26206000-26215200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr12:26206800-26215000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr12:26206800-26229600	Weak transcription	Ovary	ovary
17	chr12:26206800-26229800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr12:26207000-26215000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr12:26207000-26218000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr12:26207000-26221400	Weak transcription	Fetal Stomach	stomach
21	chr12:26207200-26215000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr12:26207200-26220400	Weak transcription	Brain Hippocampus Middle	brain
23	chr12:26207400-26223600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr12:26207600-26217400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr12:26207600-26221200	Weak transcription	Pancreas	Pancrea
26	chr12:26207800-26221400	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr12:26207800-26221400	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr12:26207800-26224000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr12:26207800-26224000	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr12:26208000-26221000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr12:26208400-26215600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr12:26208400-26234600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr12:26209000-26220400	Weak transcription	Lung	lung
34	chr12:26209600-26215200	Weak transcription	HMEC	breast
35	chr12:26209600-26215400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr12:26209600-26215400	Weak transcription	NH-A	brain
37	chr12:26209600-26220200	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr12:26209600-26220600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr12:26209600-26224800	Weak transcription	Brain Anterior Caudate	brain
40	chr12:26209600-26230400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr12:26209800-26215000	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr12:26209800-26215000	Weak transcription	NHLF	lung
43	chr12:26209800-26215000	Weak transcription	Osteobl	bone
44	chr12:26209800-26215200	Weak transcription	HSMM	muscle
45	chr12:26209800-26215200	Weak transcription	HSMMtube	muscle
46	chr12:26209800-26215400	Weak transcription	HUVEC	blood vessel
47	chr12:26209800-26220400	Weak transcription	Fetal Intestine Small	intestine
48	chr12:26211400-26227400	Weak transcription	Placenta	Placenta
49	chr12:26211600-26215000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr12:26211600-26220200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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