Variant report

Variant	rs16929945
Chromosome Location	chr12:26195731-26195732
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10505990	0.81[JPT][hapmap];0.89[AMR][1000 genomes]
rs10842643	0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes]
rs10842644	0.81[AMR][1000 genomes]
rs10842653	1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11048376	0.82[JPT][hapmap]
rs11048378	1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11048379	1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11048380	1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11048381	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11048382	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11048383	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11048384	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11048389	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11048390	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1120064	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1149804	0.90[JPT][hapmap]
rs11561207	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12227689	0.82[AMR][1000 genomes]
rs12578169	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12579146	0.82[AMR][1000 genomes]
rs12579489	0.83[JPT][hapmap];0.92[AMR][1000 genomes]
rs12581098	0.83[JPT][hapmap];0.89[AMR][1000 genomes]
rs12581361	0.83[JPT][hapmap];0.91[AMR][1000 genomes]
rs12812200	0.84[AMR][1000 genomes]
rs12812752	1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12813641	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12818478	0.84[AMR][1000 genomes]
rs1390326	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1495660	0.92[AMR][1000 genomes]
rs16929784	0.82[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes]
rs16929817	0.82[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes]
rs16929830	0.82[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes]
rs16929940	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16929950	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16929958	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16929973	0.82[JPT][hapmap];0.89[AMR][1000 genomes]
rs2055180	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2132317	0.95[JPT][hapmap];0.85[AMR][1000 genomes]
rs2271481	0.88[AMR][1000 genomes]
rs2279680	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs2343201	0.84[AMR][1000 genomes]
rs2643941	0.81[JPT][hapmap];0.82[AMR][1000 genomes]
rs34294573	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34595529	0.81[AMR][1000 genomes]
rs35924984	0.85[AMR][1000 genomes]
rs3741546	0.82[JPT][hapmap];0.92[AMR][1000 genomes]
rs3741547	0.83[JPT][hapmap];0.91[AMR][1000 genomes]
rs3803009	0.81[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes]
rs57278012	0.89[AMR][1000 genomes]
rs58299475	0.92[AMR][1000 genomes]
rs59757232	0.92[AMR][1000 genomes]
rs60335536	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61409057	0.80[AMR][1000 genomes]
rs61622173	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6487525	0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs706531	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs706532	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs706533	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs706538	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs7132590	0.84[AMR][1000 genomes]
rs7134721	0.82[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes]
rs7298162	0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes]
rs7309394	0.82[JPT][hapmap];0.90[AMR][1000 genomes]
rs7313961	0.81[JPT][hapmap];0.89[AMR][1000 genomes]
rs7953171	0.85[AMR][1000 genomes]
rs7963603	0.91[JPT][hapmap];0.81[AMR][1000 genomes]
rs7963856	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs954476	0.82[JPT][hapmap];0.89[AMR][1000 genomes]

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26182200-26195800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:26186000-26200400	Weak transcription	Right Ventricle	heart
3	chr12:26187200-26195800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr12:26187200-26196200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr12:26187200-26200400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr12:26191000-26196000	Weak transcription	Ovary	ovary
7	chr12:26191400-26195800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr12:26191400-26196000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr12:26192400-26195800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr12:26192400-26195800	Weak transcription	Psoas Muscle	Psoas
11	chr12:26192400-26195800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr12:26192400-26195800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr12:26192400-26196000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr12:26192400-26228600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr12:26193600-26195800	Weak transcription	Aorta	Aorta
16	chr12:26193600-26195800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr12:26193600-26196000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr12:26193600-26196000	Weak transcription	Brain Angular Gyrus	brain
19	chr12:26193600-26196000	Weak transcription	Brain Substantia Nigra	brain
20	chr12:26193600-26196000	Weak transcription	Lung	lung
21	chr12:26193600-26196200	Weak transcription	Right Atrium	heart
22	chr12:26193600-26200600	Weak transcription	Left Ventricle	heart
23	chr12:26194400-26196800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr12:26194600-26196400	Enhancers	Osteobl	bone
25	chr12:26194600-26196800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr12:26194600-26199000	Enhancers	NHDF-Ad	bronchial
27	chr12:26194800-26196400	Enhancers	Hela-S3	cervix
28	chr12:26194800-26196600	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr12:26194800-26196600	Enhancers	NHLF	lung
30	chr12:26194800-26197200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr12:26194800-26198600	Enhancers	NH-A	brain
32	chr12:26194800-26199000	Enhancers	Muscle Satellite Cultured Cells	--
33	chr12:26195000-26196000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr12:26195000-26196000	Enhancers	Brain Anterior Caudate	brain
35	chr12:26195000-26196200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr12:26195000-26196800	Enhancers	Placenta Amnion	Placenta Amnion
37	chr12:26195000-26197000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr12:26195000-26197000	Enhancers	Stomach Smooth Muscle	stomach
39	chr12:26195000-26197000	Enhancers	A549	lung
40	chr12:26195000-26197200	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr12:26195000-26197200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr12:26195000-26197200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr12:26195000-26197200	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr12:26195000-26197200	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr12:26195000-26197600	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr12:26195000-26197600	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr12:26195200-26195800	Enhancers	Brain Hippocampus Middle	brain
48	chr12:26195200-26195800	Weak transcription	Fetal Stomach	stomach
49	chr12:26195200-26196400	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr12:26195200-26196400	Enhancers	Brain Germinal Matrix	brain

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