Variant report

Variant	rs61409057
Chromosome Location	chr12:26242669-26242670
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26240929..26244393-chr12:26265760..26268742,3	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10505990	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10505991	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12578169	0.80[AMR][1000 genomes]
rs12579146	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12579157	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12579489	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12581098	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12581361	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12581690	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495660	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16929940	0.82[AMR][1000 genomes]
rs16929945	0.80[AMR][1000 genomes]
rs16929950	0.82[AMR][1000 genomes]
rs16929958	0.82[AMR][1000 genomes]
rs16929973	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2271481	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35823259	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3741546	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3741547	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs57278012	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs58299475	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs59757232	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs60335536	0.80[AMR][1000 genomes]
rs60565171	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7304311	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7309394	0.80[ASN][1000 genomes]
rs7313961	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs954476	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv976037	chr12:26228360-26244803	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26222800-26245800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr12:26231200-26244200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr12:26231400-26243800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr12:26231400-26243800	Weak transcription	NHDF-Ad	bronchial
5	chr12:26231400-26244000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr12:26231600-26243600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr12:26235200-26243800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr12:26235200-26243800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr12:26235400-26246000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr12:26242200-26243800	Weak transcription	Fetal Lung	lung
11	chr12:26242200-26245000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr12:26242200-26245000	Enhancers	Placenta	Placenta
13	chr12:26242400-26243800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr12:26242400-26247200	Weak transcription	Fetal Intestine Small	intestine
15	chr12:26242400-26247800	Weak transcription	Fetal Intestine Large	intestine

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