Variant report

Variant	rs16929958
Chromosome Location	chr12:26200095-26200096
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10505990	0.80[JPT][hapmap];0.88[AMR][1000 genomes]
rs10842643	0.81[CHB][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.82[AMR][1000 genomes]
rs10842644	0.82[AMR][1000 genomes]
rs10842653	1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11048360	0.81[AMR][1000 genomes]
rs11048376	0.82[JPT][hapmap]
rs11048378	1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11048379	1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11048380	1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11048381	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11048382	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11048383	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11048384	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11048389	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11048390	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1120064	0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1149804	0.90[JPT][hapmap]
rs11561207	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12227689	0.84[AMR][1000 genomes]
rs12578169	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12579146	0.83[AMR][1000 genomes]
rs12579489	0.82[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs12581098	0.82[JPT][hapmap];0.88[AMR][1000 genomes]
rs12581361	0.82[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12812200	0.83[AMR][1000 genomes]
rs12812752	1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12813641	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12818478	0.85[AMR][1000 genomes]
rs1390326	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1495660	0.93[GIH][hapmap];0.90[MEX][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs16929784	0.81[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes]
rs16929817	0.81[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes]
rs16929830	0.81[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes]
rs16929940	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16929945	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16929950	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16929973	0.93[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2055180	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2132317	0.95[JPT][hapmap];0.84[AMR][1000 genomes]
rs2271481	0.90[CHD][hapmap];0.81[GIH][hapmap];0.90[MEX][hapmap];0.89[AMR][1000 genomes]
rs2279680	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs2343201	0.85[AMR][1000 genomes]
rs2643941	0.81[JPT][hapmap];0.84[AMR][1000 genomes]
rs34294573	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs34595529	0.82[AMR][1000 genomes]
rs35924984	0.84[AMR][1000 genomes]
rs3741546	0.93[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.90[MEX][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs3741547	0.82[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs3803009	0.81[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.85[AMR][1000 genomes]
rs57278012	0.88[AMR][1000 genomes]
rs58299475	0.94[AMR][1000 genomes]
rs59757232	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs60335536	0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61409057	0.82[AMR][1000 genomes]
rs61622173	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6487525	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs706531	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs706532	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs706533	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs706538	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7132590	0.85[AMR][1000 genomes]
rs7134721	0.81[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes]
rs7298162	0.81[CHB][hapmap];0.80[CHD][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.82[AMR][1000 genomes]
rs7309394	0.97[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.85[MEX][hapmap];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7313961	0.80[JPT][hapmap];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7953171	0.84[AMR][1000 genomes]
rs7963603	0.90[JPT][hapmap];0.82[AMR][1000 genomes]
rs7963856	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs954476	0.82[JPT][hapmap];0.88[AMR][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26186000-26200400	Weak transcription	Right Ventricle	heart
2	chr12:26187200-26200400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:26192400-26228600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:26193600-26200600	Weak transcription	Left Ventricle	heart
5	chr12:26195200-26201200	Enhancers	Colon Smooth Muscle	Colon
6	chr12:26195600-26200600	Weak transcription	HUVEC	blood vessel
7	chr12:26196200-26208200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr12:26196400-26200400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr12:26196400-26200400	Weak transcription	Fetal Muscle Leg	muscle
10	chr12:26196400-26200600	Weak transcription	Fetal Heart	heart
11	chr12:26196400-26201000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr12:26196400-26219800	Weak transcription	Fetal Kidney	kidney
13	chr12:26196600-26200400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr12:26196600-26200400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr12:26196600-26200400	Weak transcription	Lung	lung
16	chr12:26196600-26200600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr12:26196800-26200400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr12:26196800-26200400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr12:26196800-26200800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr12:26196800-26201400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr12:26197000-26200400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr12:26197000-26201600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr12:26197000-26208200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr12:26197200-26200400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr12:26197200-26200400	Weak transcription	Ovary	ovary
26	chr12:26197200-26200400	Weak transcription	Psoas Muscle	Psoas
27	chr12:26197200-26200400	Weak transcription	Right Atrium	heart
28	chr12:26197200-26200600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr12:26197200-26200600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr12:26197200-26200600	Weak transcription	Placenta	Placenta
31	chr12:26197200-26206000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr12:26197200-26209400	Weak transcription	NHLF	lung
33	chr12:26197200-26211800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr12:26197200-26228600	Weak transcription	Aorta	Aorta
35	chr12:26197600-26209200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr12:26197800-26201400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr12:26197800-26209000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr12:26198000-26200800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr12:26198600-26200600	Weak transcription	NH-A	brain
40	chr12:26198800-26200800	Weak transcription	Osteobl	bone
41	chr12:26199000-26200800	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr12:26199200-26200400	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr12:26199200-26220200	Weak transcription	Brain Substantia Nigra	brain
44	chr12:26199400-26221600	Weak transcription	Brain Cingulate Gyrus	brain
45	chr12:26199800-26200600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr12:26199800-26200600	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr12:26199800-26200800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr12:26199800-26201600	Enhancers	H1 Cell Line	embryonic stem cell
49	chr12:26200000-26200200	Enhancers	Fetal Brain Male	brain
50	chr12:26200000-26200600	Enhancers	NHDF-Ad	bronchial

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