Variant report

Variant	rs6487525
Chromosome Location	chr12:26193435-26193436
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10505990	0.81[JPT][hapmap]
rs10842643	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10842644	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10842653	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11048360	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11048372	0.83[AMR][1000 genomes]
rs11048376	0.81[JPT][hapmap]
rs11048378	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11048379	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11048380	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11048381	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11048382	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11048383	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11048384	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11048389	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11048390	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1120064	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1149804	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs11561207	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12227689	0.93[AMR][1000 genomes]
rs12578169	0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12579489	0.82[JPT][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12581098	0.82[JPT][hapmap]
rs12581361	0.82[JPT][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12812200	0.91[AMR][1000 genomes]
rs12812752	0.87[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12813641	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12818478	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12831248	0.83[AMR][1000 genomes]
rs1390326	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1495660	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs16929784	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16929817	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16929830	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16929846	0.82[AMR][1000 genomes]
rs16929940	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16929945	0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16929950	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16929958	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16929973	0.81[JPT][hapmap]
rs2055180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2132317	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2279680	0.94[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes]
rs2343201	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2643941	1.00[CEU][hapmap];0.81[JPT][hapmap];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34294573	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34595529	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35924984	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3741546	0.81[JPT][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs3741547	0.82[JPT][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs3803009	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs58299475	0.82[AMR][1000 genomes]
rs59757232	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs60335536	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61622173	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs706524	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs706531	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs706532	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs706533	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs706538	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs7132590	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7134721	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7298162	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7309394	0.81[JPT][hapmap]
rs7313961	0.81[JPT][hapmap]
rs7953171	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7963603	1.00[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7963856	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs829837	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs829987	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs954476	0.82[JPT][hapmap]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26180800-26195000	Weak transcription	HSMM	muscle
2	chr12:26181000-26195200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:26182200-26195800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:26186000-26200400	Weak transcription	Right Ventricle	heart
5	chr12:26186200-26195000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr12:26187200-26195800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr12:26187200-26196200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr12:26187200-26200400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr12:26187800-26194800	Weak transcription	HUVEC	blood vessel
10	chr12:26188000-26194600	Weak transcription	Osteobl	bone
11	chr12:26188000-26195200	Weak transcription	Fetal Kidney	kidney
12	chr12:26188200-26194600	Weak transcription	NHDF-Ad	bronchial
13	chr12:26188200-26194800	Weak transcription	NH-A	brain
14	chr12:26188800-26194000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr12:26189000-26193800	Enhancers	Fetal Intestine Small	intestine
16	chr12:26189200-26194800	Weak transcription	Hela-S3	cervix
17	chr12:26190800-26193600	Enhancers	H1 Cell Line	embryonic stem cell
18	chr12:26191000-26193600	Enhancers	Brain Anterior Caudate	brain
19	chr12:26191000-26195000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr12:26191000-26195400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr12:26191000-26196000	Weak transcription	Ovary	ovary
22	chr12:26191200-26195000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr12:26191200-26195000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr12:26191200-26195200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr12:26191400-26194600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr12:26191400-26195800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr12:26191400-26196000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr12:26192200-26195000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr12:26192400-26193600	Enhancers	Brain Angular Gyrus	brain
30	chr12:26192400-26193600	Enhancers	Brain Cingulate Gyrus	brain
31	chr12:26192400-26193600	Enhancers	Brain Substantia Nigra	brain
32	chr12:26192400-26194600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr12:26192400-26195000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr12:26192400-26195000	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr12:26192400-26195200	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr12:26192400-26195200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr12:26192400-26195200	Weak transcription	Colon Smooth Muscle	Colon
38	chr12:26192400-26195800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr12:26192400-26195800	Weak transcription	Psoas Muscle	Psoas
40	chr12:26192400-26195800	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr12:26192400-26195800	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr12:26192400-26196000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr12:26192400-26228600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr12:26192600-26195000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr12:26193000-26193600	Enhancers	Right Atrium	heart
46	chr12:26193200-26193600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr12:26193200-26193600	Enhancers	Aorta	Aorta
48	chr12:26193200-26193600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
49	chr12:26193200-26193600	Enhancers	Left Ventricle	heart
50	chr12:26193200-26193600	Enhancers	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links