Variant report

Variant	rs35924984
Chromosome Location	chr12:26151400-26151401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10842643	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10842644	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10842653	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11048360	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11048372	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11048378	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11048379	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11048380	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11048381	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11048382	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11048383	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11048384	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11048389	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11048390	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1120064	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1149804	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11561207	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12227689	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12578169	0.85[AMR][1000 genomes]
rs12579489	0.81[AMR][1000 genomes]
rs12812200	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12812752	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12813641	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12818478	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12831248	0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1390326	0.81[AMR][1000 genomes]
rs1495660	0.81[AMR][1000 genomes]
rs1691889	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16929784	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16929817	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16929830	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16929846	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16929940	0.84[AMR][1000 genomes]
rs16929945	0.85[AMR][1000 genomes]
rs16929950	0.84[AMR][1000 genomes]
rs16929958	0.84[AMR][1000 genomes]
rs2055180	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2132317	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2279680	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2343201	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2643941	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34294573	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34595529	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3741546	0.81[AMR][1000 genomes]
rs3803009	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58299475	0.81[AMR][1000 genomes]
rs59757232	0.81[AMR][1000 genomes]
rs60335536	0.85[AMR][1000 genomes]
rs61622173	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6487525	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs706524	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs706526	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs706531	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs706532	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs706533	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs706538	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7132590	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7134721	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7298162	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7953171	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7963603	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7963856	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs829837	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs829987	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs853656	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758300	chr12:25992331-26161116	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	esv2759886	chr12:25992331-26161116	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv898931	chr12:26123345-26192936	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26139600-26160000	Weak transcription	Pancreas	Pancrea
2	chr12:26142200-26155600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr12:26144000-26151600	Enhancers	Colon Smooth Muscle	Colon
4	chr12:26144400-26152200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr12:26145000-26151400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr12:26145200-26151400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr12:26145200-26152600	Enhancers	Osteobl	bone
8	chr12:26145600-26151800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr12:26145600-26163000	Weak transcription	Fetal Muscle Leg	muscle
10	chr12:26145800-26152400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr12:26145800-26153400	Weak transcription	Right Atrium	heart
12	chr12:26146200-26152200	Enhancers	HSMM	muscle
13	chr12:26146200-26163000	Weak transcription	Lung	lung
14	chr12:26146600-26155600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr12:26147200-26151400	Enhancers	Rectal Smooth Muscle	rectum
16	chr12:26148000-26151600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr12:26148000-26152200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr12:26148000-26152200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr12:26148000-26163600	Weak transcription	Aorta	Aorta
20	chr12:26148200-26155600	Weak transcription	Ovary	ovary
21	chr12:26148200-26157000	Weak transcription	Psoas Muscle	Psoas
22	chr12:26148400-26151600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr12:26149000-26151600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr12:26149000-26152600	Weak transcription	Fetal Intestine Small	intestine
25	chr12:26150000-26151400	Enhancers	Hela-S3	cervix
26	chr12:26150200-26151400	Enhancers	NHEK	skin
27	chr12:26150200-26151600	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr12:26150200-26152200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr12:26150600-26151800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr12:26150800-26151600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr12:26150800-26151800	Enhancers	A549	lung
32	chr12:26150800-26155600	Weak transcription	Brain Cingulate Gyrus	brain
33	chr12:26150800-26155600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr12:26150800-26159600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr12:26150800-26160000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr12:26150800-26163200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr12:26151000-26152600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr12:26151000-26152800	Weak transcription	HSMMtube	muscle
39	chr12:26151000-26154800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr12:26151000-26155600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr12:26151000-26155600	Weak transcription	Fetal Lung	lung
42	chr12:26151000-26155600	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr12:26151000-26155800	Weak transcription	Fetal Heart	heart
44	chr12:26151000-26163000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr12:26151200-26151400	Enhancers	NHDF-Ad	bronchial
46	chr12:26151200-26151600	Enhancers	H1 Cell Line	embryonic stem cell
47	chr12:26151200-26151600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr12:26151200-26151600	Enhancers	NH-A	brain
49	chr12:26151200-26151800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr12:26151200-26152200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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