Variant report

Variant	rs12578169
Chromosome Location	chr12:26196268-26196269
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10505990	0.80[JPT][hapmap];0.89[AMR][1000 genomes]
rs10842643	0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes]
rs10842644	0.81[AMR][1000 genomes]
rs10842653	1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11048376	0.82[JPT][hapmap]
rs11048378	1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11048379	1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11048380	1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11048381	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11048382	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11048383	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11048384	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11048389	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11048390	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1120064	0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1149804	0.90[JPT][hapmap]
rs11561207	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12227689	0.82[AMR][1000 genomes]
rs12579146	0.82[AMR][1000 genomes]
rs12579489	0.82[JPT][hapmap];0.92[AMR][1000 genomes]
rs12581098	0.82[JPT][hapmap];0.89[AMR][1000 genomes]
rs12581361	0.82[JPT][hapmap];0.91[AMR][1000 genomes]
rs12812200	0.84[AMR][1000 genomes]
rs12812752	1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12813641	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12818478	0.84[AMR][1000 genomes]
rs1390326	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1495660	0.92[GIH][hapmap];0.92[AMR][1000 genomes]
rs16929784	0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes]
rs16929817	0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes]
rs16929830	0.81[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes]
rs16929940	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16929945	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16929950	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16929958	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16929973	0.90[CHD][hapmap];0.92[GIH][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes]
rs2055180	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2132317	0.95[JPT][hapmap];0.85[AMR][1000 genomes]
rs2271481	0.86[CHD][hapmap];0.81[GIH][hapmap];0.88[AMR][1000 genomes]
rs2279680	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs2343201	0.84[AMR][1000 genomes]
rs2643941	0.81[JPT][hapmap];0.82[AMR][1000 genomes]
rs34294573	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34595529	0.81[AMR][1000 genomes]
rs35924984	0.85[AMR][1000 genomes]
rs3741546	0.90[CHD][hapmap];0.92[GIH][hapmap];0.82[JPT][hapmap];0.92[AMR][1000 genomes]
rs3741547	0.82[JPT][hapmap];0.91[AMR][1000 genomes]
rs3803009	0.81[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes]
rs57278012	0.89[AMR][1000 genomes]
rs58299475	0.92[AMR][1000 genomes]
rs59757232	0.92[AMR][1000 genomes]
rs60335536	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61409057	0.80[AMR][1000 genomes]
rs61622173	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6487525	0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs706531	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs706532	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs706533	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs706538	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7132590	0.84[AMR][1000 genomes]
rs7134721	0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes]
rs7298162	0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes]
rs7309394	0.93[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes]
rs7313961	0.80[JPT][hapmap];0.89[AMR][1000 genomes]
rs7953171	0.85[AMR][1000 genomes]
rs7963603	0.90[JPT][hapmap];0.81[AMR][1000 genomes]
rs7963856	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs954476	0.82[JPT][hapmap];0.89[AMR][1000 genomes]

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26186000-26200400	Weak transcription	Right Ventricle	heart
2	chr12:26187200-26200400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:26192400-26228600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:26193600-26200600	Weak transcription	Left Ventricle	heart
5	chr12:26194400-26196800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr12:26194600-26196400	Enhancers	Osteobl	bone
7	chr12:26194600-26196800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr12:26194600-26199000	Enhancers	NHDF-Ad	bronchial
9	chr12:26194800-26196400	Enhancers	Hela-S3	cervix
10	chr12:26194800-26196600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr12:26194800-26196600	Enhancers	NHLF	lung
12	chr12:26194800-26197200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr12:26194800-26198600	Enhancers	NH-A	brain
14	chr12:26194800-26199000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr12:26195000-26196800	Enhancers	Placenta Amnion	Placenta Amnion
16	chr12:26195000-26197000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr12:26195000-26197000	Enhancers	Stomach Smooth Muscle	stomach
18	chr12:26195000-26197000	Enhancers	A549	lung
19	chr12:26195000-26197200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr12:26195000-26197200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr12:26195000-26197200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr12:26195000-26197200	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr12:26195000-26197200	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr12:26195000-26197600	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr12:26195000-26197600	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr12:26195200-26196400	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr12:26195200-26196400	Enhancers	Brain Germinal Matrix	brain
28	chr12:26195200-26196400	Enhancers	Fetal Kidney	kidney
29	chr12:26195200-26197200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr12:26195200-26197600	Enhancers	Fetal Lung	lung
31	chr12:26195200-26197800	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr12:26195200-26201200	Enhancers	Colon Smooth Muscle	Colon
33	chr12:26195400-26196400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr12:26195400-26196800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr12:26195600-26197200	Enhancers	Rectal Smooth Muscle	rectum
36	chr12:26195600-26198400	Weak transcription	HSMM	muscle
37	chr12:26195600-26198600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr12:26195600-26200600	Weak transcription	HUVEC	blood vessel
39	chr12:26195800-26196400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
40	chr12:26195800-26196400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr12:26195800-26196400	Enhancers	Fetal Heart	heart
42	chr12:26195800-26196600	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr12:26195800-26196800	Enhancers	H9 Cell Line	embryonic stem cell
44	chr12:26195800-26196800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr12:26195800-26196800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
46	chr12:26195800-26196800	Enhancers	NHEK	skin
47	chr12:26195800-26197200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr12:26195800-26197200	Enhancers	Aorta	Aorta
49	chr12:26195800-26197200	Enhancers	Fetal Brain Female	brain
50	chr12:26195800-26197200	Enhancers	Fetal Stomach	stomach

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