Variant report

Variant	rs7309394
Chromosome Location	chr12:26206489-26206490
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10505990	0.88[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10842643	0.85[MEX][hapmap]
rs10842653	0.81[JPT][hapmap]
rs11048378	0.82[JPT][hapmap]
rs11048379	0.82[JPT][hapmap]
rs11048380	0.82[JPT][hapmap]
rs1120064	0.82[JPT][hapmap]
rs12578169	0.93[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes]
rs12579146	0.80[ASN][1000 genomes]
rs12579157	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12579489	0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12581098	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12581361	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12581690	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12812752	0.82[JPT][hapmap]
rs1390326	0.82[JPT][hapmap];0.85[AMR][1000 genomes]
rs1495660	0.83[CHB][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16929940	0.82[JPT][hapmap];0.88[AMR][1000 genomes]
rs16929945	0.82[JPT][hapmap];0.90[AMR][1000 genomes]
rs16929950	0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs16929958	0.97[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.85[MEX][hapmap];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs16929973	1.00[ASW][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2055180	0.82[JPT][hapmap]
rs2271481	0.89[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35823259	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs3741546	0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3741547	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3803009	0.86[CHD][hapmap];0.85[MEX][hapmap]
rs57278012	0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs58299475	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59757232	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs60335536	0.90[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs60565171	0.80[ASN][1000 genomes]
rs61409057	0.80[ASN][1000 genomes]
rs6487525	0.81[JPT][hapmap]
rs7298162	0.83[CHD][hapmap];0.85[MEX][hapmap]
rs7304311	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7313961	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs954476	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26192400-26228600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:26196200-26208200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:26196400-26219800	Weak transcription	Fetal Kidney	kidney
4	chr12:26197000-26208200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr12:26197200-26209400	Weak transcription	NHLF	lung
6	chr12:26197200-26211800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr12:26197200-26228600	Weak transcription	Aorta	Aorta
8	chr12:26197600-26209200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr12:26197800-26209000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr12:26199200-26220200	Weak transcription	Brain Substantia Nigra	brain
11	chr12:26199400-26221600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr12:26200600-26209200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr12:26200800-26207400	Weak transcription	Pancreas	Pancrea
14	chr12:26200800-26208800	Weak transcription	Lung	lung
15	chr12:26200800-26209200	Weak transcription	Fetal Brain Male	brain
16	chr12:26200800-26229000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr12:26201000-26206600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr12:26201000-26207400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr12:26201000-26220800	Weak transcription	Left Ventricle	heart
20	chr12:26201000-26223400	Weak transcription	Fetal Muscle Leg	muscle
21	chr12:26201200-26206600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr12:26201200-26206600	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr12:26201200-26210800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr12:26201200-26234600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr12:26201400-26206600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr12:26201400-26206600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr12:26201400-26209600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr12:26201400-26221600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr12:26201600-26206600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr12:26201600-26206600	Weak transcription	Right Atrium	heart
31	chr12:26201600-26215400	Weak transcription	Psoas Muscle	Psoas
32	chr12:26201600-26236200	Weak transcription	Right Ventricle	heart
33	chr12:26202000-26211800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr12:26204600-26211200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr12:26204800-26206800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr12:26204800-26207600	Enhancers	NHDF-Ad	bronchial
37	chr12:26205200-26207800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr12:26205400-26206800	Enhancers	Muscle Satellite Cultured Cells	--
39	chr12:26205400-26207000	Enhancers	Duodenum Smooth Muscle	Duodenum
40	chr12:26205400-26207800	Enhancers	Colon Smooth Muscle	Colon
41	chr12:26205400-26208200	Enhancers	Osteobl	bone
42	chr12:26205400-26209800	Enhancers	HUVEC	blood vessel
43	chr12:26205400-26215400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr12:26205600-26207000	Enhancers	Fetal Intestine Small	intestine
45	chr12:26205600-26208200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr12:26205800-26206800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr12:26205800-26207200	Enhancers	Rectal Smooth Muscle	rectum
48	chr12:26206000-26206800	Enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr12:26206000-26206800	Weak transcription	Stomach Mucosa	stomach
50	chr12:26206000-26209200	Weak transcription	NH-A	brain

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