Variant report

Variant	rs1495660
Chromosome Location	chr12:26217567-26217568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr12:26217550-26217723	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
RASSF8	TF binding region

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10505990	0.94[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10505991	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10842643	0.90[MEX][hapmap]
rs10842653	0.81[AMR][1000 genomes]
rs11048378	0.82[AMR][1000 genomes]
rs11048379	0.82[AMR][1000 genomes]
rs11048380	0.81[AMR][1000 genomes]
rs11048383	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11048384	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11048389	0.81[AMR][1000 genomes]
rs11048390	0.82[AMR][1000 genomes]
rs12227689	0.81[AMR][1000 genomes]
rs12578169	0.92[GIH][hapmap];0.92[AMR][1000 genomes]
rs12579146	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12579157	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12579489	0.94[CHB][hapmap];0.91[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12581098	0.94[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12581361	0.89[CHB][hapmap];0.91[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12581690	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12812200	0.80[AMR][1000 genomes]
rs12812752	0.81[AMR][1000 genomes]
rs12813641	0.82[AMR][1000 genomes]
rs12818478	0.82[AMR][1000 genomes]
rs1390326	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs16929830	0.82[AMR][1000 genomes]
rs16929940	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs16929945	0.92[AMR][1000 genomes]
rs16929950	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs16929958	0.93[GIH][hapmap];0.90[MEX][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs16929973	0.89[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.90[MEX][hapmap];0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2055180	0.83[AMR][1000 genomes]
rs2132317	0.81[AMR][1000 genomes]
rs2271481	0.94[CHB][hapmap];0.81[CHD][hapmap];0.88[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2343201	0.82[AMR][1000 genomes]
rs2643941	0.81[AMR][1000 genomes]
rs34294573	0.84[AMR][1000 genomes]
rs35823259	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35924984	0.81[AMR][1000 genomes]
rs3741546	0.89[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3741547	0.89[CHB][hapmap];0.91[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3803009	0.90[MEX][hapmap];0.82[AMR][1000 genomes]
rs57278012	0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs58299475	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59757232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs60335536	0.92[AMR][1000 genomes]
rs60565171	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61409057	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61622173	0.81[AMR][1000 genomes]
rs6487525	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7132590	0.82[AMR][1000 genomes]
rs7298162	0.90[MEX][hapmap]
rs7304311	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7309394	0.83[CHB][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7313961	0.89[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7953171	0.81[AMR][1000 genomes]
rs7963856	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs954476	0.94[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26192400-26228600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:26196400-26219800	Weak transcription	Fetal Kidney	kidney
3	chr12:26197200-26228600	Weak transcription	Aorta	Aorta
4	chr12:26199200-26220200	Weak transcription	Brain Substantia Nigra	brain
5	chr12:26199400-26221600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr12:26200800-26229000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr12:26201000-26220800	Weak transcription	Left Ventricle	heart
8	chr12:26201000-26223400	Weak transcription	Fetal Muscle Leg	muscle
9	chr12:26201200-26234600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr12:26201400-26221600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr12:26201600-26236200	Weak transcription	Right Ventricle	heart
12	chr12:26206800-26229600	Weak transcription	Ovary	ovary
13	chr12:26206800-26229800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr12:26207000-26218000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr12:26207000-26221400	Weak transcription	Fetal Stomach	stomach
16	chr12:26207200-26220400	Weak transcription	Brain Hippocampus Middle	brain
17	chr12:26207400-26223600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr12:26207600-26221200	Weak transcription	Pancreas	Pancrea
19	chr12:26207800-26221400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr12:26207800-26221400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr12:26207800-26224000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr12:26207800-26224000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr12:26208000-26221000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr12:26208400-26234600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr12:26209000-26220400	Weak transcription	Lung	lung
26	chr12:26209600-26220200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr12:26209600-26220600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr12:26209600-26224800	Weak transcription	Brain Anterior Caudate	brain
29	chr12:26209600-26230400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr12:26209800-26220400	Weak transcription	Fetal Intestine Small	intestine
31	chr12:26211400-26227400	Weak transcription	Placenta	Placenta
32	chr12:26211600-26220200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr12:26211600-26223800	Weak transcription	Fetal Intestine Large	intestine
34	chr12:26211600-26234600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr12:26211800-26217800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr12:26211800-26230800	Weak transcription	Fetal Lung	lung
37	chr12:26212000-26217800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr12:26212200-26223400	Weak transcription	Colon Smooth Muscle	Colon
39	chr12:26214400-26224800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr12:26215200-26230200	Weak transcription	Adipose Nuclei	Adipose
41	chr12:26215600-26217600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr12:26215600-26222600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr12:26215800-26218200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr12:26215800-26220800	Weak transcription	HUVEC	blood vessel
45	chr12:26215800-26221400	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr12:26215800-26221600	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr12:26215800-26230800	Weak transcription	A549	lung
48	chr12:26216000-26218000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr12:26216000-26218200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr12:26216000-26218200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links