Variant report

Variant	rs10505991
Chromosome Location	chr12:26245910-26245911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26244568..26246194-chr12:26248819..26250722,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10505990	0.89[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs12579146	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12579157	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12579489	0.90[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12581098	0.90[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs12581361	0.84[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12581690	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1495660	0.89[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16929973	0.89[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2271481	0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35823259	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3741546	0.89[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3741547	0.84[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4580000	0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs57278012	0.83[ASN][1000 genomes]
rs58299475	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs59757232	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs60565171	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61409057	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7304311	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7309394	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs7313961	0.84[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs73285154	0.81[AFR][1000 genomes]
rs74073618	0.91[AFR][1000 genomes]
rs954476	0.90[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26235400-26246000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr12:26242400-26247200	Weak transcription	Fetal Intestine Small	intestine
3	chr12:26242400-26247800	Weak transcription	Fetal Intestine Large	intestine
4	chr12:26243800-26246400	Enhancers	Fetal Lung	lung
5	chr12:26244400-26246800	Weak transcription	HSMMtube	muscle
6	chr12:26244400-26250200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr12:26244400-26250400	Weak transcription	NHDF-Ad	bronchial
8	chr12:26244600-26249800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr12:26244600-26254200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr12:26244800-26250200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr12:26245000-26246200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr12:26245000-26246200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr12:26245000-26248800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr12:26245000-26249800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr12:26245000-26250200	Weak transcription	Osteobl	bone
16	chr12:26245200-26246200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr12:26245200-26247000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr12:26245200-26249800	Weak transcription	NHEK	skin
19	chr12:26245200-26254000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr12:26245400-26246200	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr12:26245800-26246200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr12:26245800-26246200	Enhancers	Muscle Satellite Cultured Cells	--
23	chr12:26245800-26250000	Weak transcription	HMEC	breast

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