Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12579157	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12581690	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16929965	0.83[EUR][1000 genomes]
rs16930053	0.98[EUR][1000 genomes]
rs16930084	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16930087	0.98[EUR][1000 genomes]
rs16930105	0.98[EUR][1000 genomes]
rs16930112	0.98[EUR][1000 genomes]
rs2172912	0.83[EUR][1000 genomes]
rs35823259	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4594088	0.90[EUR][1000 genomes]
rs56959935	0.83[EUR][1000 genomes]
rs58882782	0.83[EUR][1000 genomes]
rs60565171	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs61915665	0.83[EUR][1000 genomes]
rs61915666	0.89[EUR][1000 genomes]
rs61915669	0.98[EUR][1000 genomes]
rs61915671	0.98[EUR][1000 genomes]
rs61915679	0.98[EUR][1000 genomes]
rs61915682	0.98[EUR][1000 genomes]
rs61915683	0.98[EUR][1000 genomes]
rs6487528	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7304311	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7316516	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv976037	chr12:26228360-26244803	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26222800-26245800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr12:26231200-26244200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr12:26231400-26243800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr12:26231400-26243800	Weak transcription	NHDF-Ad	bronchial
5	chr12:26231400-26244000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr12:26231600-26243600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr12:26235200-26238800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr12:26235200-26242000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr12:26235200-26243800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr12:26235200-26243800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr12:26235400-26246000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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