Variant report

Variant	rs16930105
Chromosome Location	chr12:26243625-26243626
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16929965	1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs16930053	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16930084	0.98[EUR][1000 genomes]
rs16930087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16930112	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2172912	0.82[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs4594088	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56959935	0.85[EUR][1000 genomes]
rs58882782	0.85[EUR][1000 genomes]
rs61915665	0.85[EUR][1000 genomes]
rs61915666	0.91[EUR][1000 genomes]
rs61915669	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61915671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61915679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61915680	0.98[EUR][1000 genomes]
rs61915682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61915683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7316516	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv976037	chr12:26228360-26244803	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26222800-26245800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr12:26231200-26244200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr12:26231400-26243800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr12:26231400-26243800	Weak transcription	NHDF-Ad	bronchial
5	chr12:26231400-26244000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr12:26235200-26243800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr12:26235200-26243800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr12:26235400-26246000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr12:26242200-26243800	Weak transcription	Fetal Lung	lung
10	chr12:26242200-26245000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr12:26242200-26245000	Enhancers	Placenta	Placenta
12	chr12:26242400-26243800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr12:26242400-26247200	Weak transcription	Fetal Intestine Small	intestine
14	chr12:26242400-26247800	Weak transcription	Fetal Intestine Large	intestine
15	chr12:26243600-26245000	Enhancers	Placenta Amnion	Placenta Amnion
16	chr12:26243600-26245200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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