Variant report

Variant	rs58882782
Chromosome Location	chr12:26198393-26198394
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16929965	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16930053	0.85[EUR][1000 genomes]
rs16930084	0.83[EUR][1000 genomes]
rs16930087	0.85[EUR][1000 genomes]
rs16930105	0.85[EUR][1000 genomes]
rs16930112	0.85[EUR][1000 genomes]
rs2172912	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56959935	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58597112	0.84[ASN][1000 genomes]
rs61914216	0.84[ASN][1000 genomes]
rs61914239	0.87[ASN][1000 genomes]
rs61914242	0.93[ASN][1000 genomes]
rs61914243	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61914244	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61914245	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61914246	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61915665	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61915666	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61915669	0.85[EUR][1000 genomes]
rs61915671	0.85[EUR][1000 genomes]
rs61915679	0.85[EUR][1000 genomes]
rs61915680	0.83[EUR][1000 genomes]
rs61915682	0.85[EUR][1000 genomes]
rs61915683	0.85[EUR][1000 genomes]
rs7316516	0.93[EUR][1000 genomes]
rs7962900	0.84[ASN][1000 genomes]
rs7963582	0.84[ASN][1000 genomes]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26186000-26200400	Weak transcription	Right Ventricle	heart
2	chr12:26187200-26200400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:26192400-26228600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:26193600-26200600	Weak transcription	Left Ventricle	heart
5	chr12:26194600-26199000	Enhancers	NHDF-Ad	bronchial
6	chr12:26194800-26198600	Enhancers	NH-A	brain
7	chr12:26194800-26199000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr12:26195200-26201200	Enhancers	Colon Smooth Muscle	Colon
9	chr12:26195600-26198400	Weak transcription	HSMM	muscle
10	chr12:26195600-26198600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr12:26195600-26200600	Weak transcription	HUVEC	blood vessel
12	chr12:26196000-26199000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr12:26196200-26208200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr12:26196400-26199800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr12:26196400-26200400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr12:26196400-26200400	Weak transcription	Fetal Muscle Leg	muscle
17	chr12:26196400-26200600	Weak transcription	Fetal Heart	heart
18	chr12:26196400-26201000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr12:26196400-26219800	Weak transcription	Fetal Kidney	kidney
20	chr12:26196600-26200400	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr12:26196600-26200400	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr12:26196600-26200400	Weak transcription	Lung	lung
23	chr12:26196600-26200600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr12:26196800-26199800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr12:26196800-26200400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr12:26196800-26200400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr12:26196800-26200800	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr12:26196800-26201400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr12:26197000-26198400	Weak transcription	Brain Cingulate Gyrus	brain
30	chr12:26197000-26198600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr12:26197000-26198800	Enhancers	Osteobl	bone
32	chr12:26197000-26200000	Weak transcription	Stomach Smooth Muscle	stomach
33	chr12:26197000-26200400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr12:26197000-26201600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr12:26197000-26208200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr12:26197200-26198800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr12:26197200-26199200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr12:26197200-26199200	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr12:26197200-26199800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr12:26197200-26200000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr12:26197200-26200000	Enhancers	Brain Anterior Caudate	brain
42	chr12:26197200-26200000	Enhancers	Brain Hippocampus Middle	brain
43	chr12:26197200-26200400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr12:26197200-26200400	Weak transcription	Ovary	ovary
45	chr12:26197200-26200400	Weak transcription	Psoas Muscle	Psoas
46	chr12:26197200-26200400	Weak transcription	Right Atrium	heart
47	chr12:26197200-26200600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr12:26197200-26200600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr12:26197200-26200600	Weak transcription	Placenta	Placenta
50	chr12:26197200-26206000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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