Variant report

Variant	rs16930112
Chromosome Location	chr12:26244994-26244995
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26244568..26246194-chr12:26248819..26250722,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16929850	0.81[CHD][hapmap]
rs16929965	0.82[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes]
rs16930053	1.00[ASW][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16930084	0.98[EUR][1000 genomes]
rs16930087	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16930105	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2172912	1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs4594088	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56959935	0.85[EUR][1000 genomes]
rs58882782	0.85[EUR][1000 genomes]
rs61915665	0.85[EUR][1000 genomes]
rs61915666	0.91[EUR][1000 genomes]
rs61915669	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61915671	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61915679	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61915680	0.98[EUR][1000 genomes]
rs61915682	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61915683	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7316516	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26222800-26245800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr12:26235400-26246000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr12:26242200-26245000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr12:26242200-26245000	Enhancers	Placenta	Placenta
5	chr12:26242400-26247200	Weak transcription	Fetal Intestine Small	intestine
6	chr12:26242400-26247800	Weak transcription	Fetal Intestine Large	intestine
7	chr12:26243600-26245000	Enhancers	Placenta Amnion	Placenta Amnion
8	chr12:26243600-26245200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr12:26243800-26245000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr12:26243800-26245000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr12:26243800-26245000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr12:26243800-26245200	Enhancers	NHEK	skin
13	chr12:26243800-26245800	Enhancers	HMEC	breast
14	chr12:26243800-26246400	Enhancers	Fetal Lung	lung
15	chr12:26244200-26245000	Enhancers	Osteobl	bone
16	chr12:26244400-26245400	Weak transcription	NH-A	brain
17	chr12:26244400-26246800	Weak transcription	HSMMtube	muscle
18	chr12:26244400-26250200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr12:26244400-26250400	Weak transcription	NHDF-Ad	bronchial
20	chr12:26244600-26245000	Enhancers	Brain Cingulate Gyrus	brain
21	chr12:26244600-26245800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr12:26244600-26249800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr12:26244600-26254200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr12:26244800-26245000	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr12:26244800-26250200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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