Variant report

Variant	rs568642460
Chromosome Location	chr19:53091118-53091119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:53090537-53091327	K562	blood:	n/a	n/a
2	POLR2A	chr19:53091065-53091163	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:53085553..53087688-chr19:53089270..53091312,2	MCF-7	breast:
2	chr19:53087080..53089827-chr19:53090383..53092275,2	K562	blood:

Variant related genes	Relation type
ENSG00000268886	TF binding region
ZNF137P	TF binding region
ENSG00000268886	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057296	chr19:52950339-53396986	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv510772	chr19:53037211-53103470	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1065584	chr19:53043126-53127459	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv833874	chr19:53058014-53257875	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv458743	chr19:53065661-53114267	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv580027	chr19:53065661-53114267	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv912304	chr19:53071155-53114267	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	esv1805104	chr19:53090157-53100585	Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv963070	chr19:53091108-53105222	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:53074600-53103600	Weak transcription	Fetal Brain Male	brain
2	chr19:53075400-53092200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr19:53075400-53092400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr19:53075400-53092400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
5	chr19:53076400-53096000	Strong transcription	Dnd41	blood
6	chr19:53079200-53092200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr19:53079400-53092200	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
8	chr19:53079400-53094200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
9	chr19:53079400-53096000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
10	chr19:53079600-53091800	ZNF genes & repeats	Thymus	Thymus
11	chr19:53083600-53092400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr19:53083800-53092400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
13	chr19:53084600-53091200	ZNF genes & repeats	Colonic Mucosa	Colon
14	chr19:53085400-53091200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr19:53087400-53095200	Weak transcription	Brain Anterior Caudate	brain
16	chr19:53087400-53103600	Weak transcription	Brain Substantia Nigra	brain
17	chr19:53087600-53091600	Weak transcription	Fetal Lung	lung
18	chr19:53087600-53095000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr19:53087600-53095400	Weak transcription	Fetal Kidney	kidney
20	chr19:53087600-53095400	Weak transcription	NHLF	lung
21	chr19:53087600-53099000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr19:53087600-53099000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr19:53087600-53099000	Weak transcription	NHDF-Ad	bronchial
24	chr19:53087600-53099400	Weak transcription	Brain Angular Gyrus	brain
25	chr19:53087600-53103600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr19:53087800-53092200	Weak transcription	Brain Hippocampus Middle	brain
27	chr19:53087800-53095200	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr19:53087800-53095200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr19:53087800-53095200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr19:53087800-53095400	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr19:53087800-53095400	Weak transcription	K562	blood
32	chr19:53087800-53098800	Weak transcription	HSMMtube	muscle
33	chr19:53088200-53099000	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr19:53088400-53092800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr19:53088400-53097600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr19:53088400-53099000	Weak transcription	HUVEC	blood vessel
37	chr19:53088400-53103600	Weak transcription	Psoas Muscle	Psoas
38	chr19:53088600-53094800	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr19:53088600-53094800	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr19:53088600-53095400	Weak transcription	Osteobl	bone
41	chr19:53088600-53095800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr19:53088600-53096000	Strong transcription	Fetal Stomach	stomach
43	chr19:53088600-53099200	Weak transcription	Rectal Smooth Muscle	rectum
44	chr19:53088800-53091200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr19:53088800-53092000	Weak transcription	Stomach Smooth Muscle	stomach
46	chr19:53088800-53093000	Weak transcription	Fetal Muscle Trunk	muscle
47	chr19:53088800-53093200	Weak transcription	Aorta	Aorta
48	chr19:53088800-53093200	Weak transcription	Ovary	ovary
49	chr19:53088800-53093800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr19:53088800-53095400	Strong transcription	HUES6 Cell Line	embryonic stem cell

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