Variant report

Variant	rs568688489
Chromosome Location	chr3:109646998-109646999
allele	-/AAC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009075	chr3:109462019-109800029	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv591270	chr3:109462400-109793785	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1009550	chr3:109577315-109795453	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv1839660	chr3:109591203-109678542	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv829666	chr3:109593745-109768652	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv2754434	chr3:109604310-109777310	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv236806	chr3:109638554-109647641	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv963568	chr3:109644954-109655353	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
10	esv16913	chr3:109646932-109647971	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109645200-109647000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:109645200-109647000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:109645200-109647200	Enhancers	NH-A	brain
4	chr3:109645200-109647400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:109645200-109647400	Enhancers	HMEC	breast
6	chr3:109645400-109647000	Enhancers	Osteobl	bone
7	chr3:109645400-109647200	Enhancers	NHEK	skin
8	chr3:109645600-109647000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:109645600-109647000	Enhancers	Hela-S3	cervix
10	chr3:109645600-109647400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr3:109645800-109647200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:109645800-109647200	Enhancers	NHDF-Ad	bronchial
13	chr3:109646000-109647000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr3:109646200-109647000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr3:109646400-109647000	Flanking Active TSS	A549	lung
16	chr3:109646600-109647000	Enhancers	Placenta Amnion	Placenta Amnion
17	chr3:109646600-109647000	Enhancers	HSMM	muscle
18	chr3:109646600-109647200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr3:109646600-109647400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:109646800-109647000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:109646800-109647200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:109646800-109647200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links