Variant report

Variant	rs56872455
Chromosome Location	chr3:156116294-156116295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11926141	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11926292	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12054022	0.86[EUR][1000 genomes]
rs13324876	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1450107	0.95[EUR][1000 genomes]
rs16826083	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16826108	0.86[EUR][1000 genomes]
rs17238651	0.86[EUR][1000 genomes]
rs3772261	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3772262	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3821420	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6801464	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73164745	0.93[EUR][1000 genomes]
rs7613469	0.83[EUR][1000 genomes]
rs7615568	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7619720	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7642628	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs938417	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156108200-156117000	Weak transcription	HSMMtube	muscle
2	chr3:156111200-156161600	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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